Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 91.48 | 92.06 |
| CDX81329 | Canola | plastid | 88.96 | 91.56 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 90.85 | 91.43 |
| Bra012143.1-P | Field mustard | plastid | 90.85 | 91.43 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 85.17 | 83.85 |
| KRH77040 | Soybean | mitochondrion | 64.67 | 67.43 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 65.3 | 66.77 |
| KRH28432 | Soybean | mitochondrion | 64.67 | 66.56 |
| KRH04549 | Soybean | plastid | 64.67 | 65.08 |
| PGSC0003DMT400064322 | Potato | plastid | 63.09 | 64.94 |
| KRH57814 | Soybean | mitochondrion | 64.67 | 64.87 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 61.83 | 63.64 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 60.57 | 63.58 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 36.59 | 48.54 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 48.27 | 46.65 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 41.64 | 45.83 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 47.0 | 45.71 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 46.69 | 45.12 |
| AT2G15440.1 | Thale cress | plastid | 46.37 | 44.68 |
| OQU84413 | Sorghum | golgi, mitochondrion | 44.8 | 44.38 |
| Zm00001d014532_P001 | Maize | plasma membrane | 44.8 | 44.24 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 41.96 | 44.19 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 44.8 | 43.96 |
| TraesCS2A01G512400.1 | Wheat | golgi | 43.53 | 43.67 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 45.11 | 43.6 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 43.22 | 43.35 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 44.16 | 42.81 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 45.43 | 42.48 |
| TraesCS2B01G540300.1 | Wheat | golgi | 42.27 | 42.41 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 45.74 | 42.4 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 43.53 | 42.2 |
| EER88850 | Sorghum | plastid | 44.16 | 42.17 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 45.11 | 41.94 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 43.85 | 41.87 |
| Os06t0687600-00 | Rice | golgi | 43.85 | 41.37 |
| Os04t0649900-01 | Rice | mitochondrion | 41.32 | 41.2 |
| Zm00001d002066_P001 | Maize | plasma membrane | 42.9 | 40.6 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 42.27 | 39.53 |
| Os02t0158500-00 | Rice | plastid | 42.27 | 34.18 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 29.65 | 31.86 |
| AT1G67330.1 | Thale cress | endoplasmic reticulum, golgi | 28.39 | 30.93 |
| AT1G09610.1 | Thale cress | endoplasmic reticulum, golgi | 27.44 | 30.85 |
| AT4G09990.1 | Thale cress | golgi | 28.08 | 30.69 |
| AT1G33800.1 | Thale cress | golgi, plasma membrane | 28.39 | 30.3 |
| AT1G27930.1 | Thale cress | endoplasmic reticulum, plasma membrane | 27.44 | 30.1 |
| AT4G24910.1 | Thale cress | plastid | 28.39 | 28.57 |
Protein Annotations
| MapMan:35.1 | EntrezGene:836856 | UniProt:A0A178UEM8 | ProteinID:AED98314.1 | EMBL:AK227598 | ArrayExpress:AT5G67210 |
| EnsemblPlantsGene:AT5G67210 | RefSeq:AT5G67210 | TAIR:AT5G67210 | RefSeq:AT5G67210-TAIR-G | EnsemblPlants:AT5G67210.1 | TAIR:AT5G67210.1 |
| Unigene:At.66656 | ProteinID:BAB10955.1 | EMBL:BT003079 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009834 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM | RefSeq:NP_201522.1 | ProteinID:OAO92233.1 | PFAM:PF04669 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom |
| UniProt:Q9FH92 | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI000000BECF | SEG:seg | : |
Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
Coordinates
chr5:+:26818949..26820157
Molecular Weight (calculated)
35666.4 Da
IEP (calculated)
8.067
GRAVY (calculated)
-0.278
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.