Factsheet for GSMUA_Achr6P29610_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

nucleus 2
mitochondrion 2
endoplasmic reticulum 1
plastid 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67210.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P25260_001	Banana	golgi	74.85	74.39
GSMUA_Achr8P03360_001	Banana	golgi	70.25	69.82
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	61.04	69.1
HORVU0Hr1G015370.1	Barley	cytosol, extracellular	45.71	62.34
Zm00001d014532_P001	Maize	plasma membrane	57.36	58.26
EER88850	Sorghum	plastid	58.59	57.53
VIT_03s0063g00030.t01	Wine grape	plastid	38.04	56.36
OQU84413	Sorghum	golgi, mitochondrion	54.6	55.62
TraesCS6A01G131900.1	Wheat	mitochondrion	55.83	55.49
TraesCS7B01G341900.1	Wheat	golgi, mitochondrion	57.98	55.26
TraesCS7D01G432300.1	Wheat	golgi, mitochondrion	57.36	55.16
TraesCS7A01G443100.1	Wheat	golgi, mitochondrion	57.67	55.13
TraesCS6D01G121700.1	Wheat	mitochondrion	55.21	55.05
TraesCS6B01G160200.1	Wheat	mitochondrion	54.91	53.92
Os06t0687600-00	Rice	golgi	55.52	53.87
Zm00001d015307_P001	Maize	golgi, mitochondrion, plastid	53.07	53.56
HORVU2Hr1G113560.1	Barley	golgi, plasma membrane	48.47	52.49
TraesCS2D01G513800.1	Wheat	golgi, plastid	50.61	52.22
HORVU7Hr1G100750.3	Barley	endoplasmic reticulum	54.29	52.21
TraesCS2B01G540300.1	Wheat	golgi	50.31	51.9
TraesCS2A01G512400.1	Wheat	golgi	50.0	51.58
Os04t0649900-01	Rice	mitochondrion	49.39	50.63
PGSC0003DMT400066571	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	47.85	49.68
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	47.24	49.04
VIT_07s0031g00110.t01	Wine grape	golgi	46.63	49.03
PGSC0003DMT400065494	Potato	golgi, plasma membrane, plastid	45.4	49.01
Zm00001d002066_P001	Maize	plasma membrane	49.69	48.36
KXG27192	Sorghum	golgi, mitochondrion, plastid	48.47	48.32
Solyc02g093090.1.1	Tomato	extracellular, nucleus	45.4	48.05
PGSC0003DMT400064322	Potato	plastid	45.4	48.05
KRH50341	Soybean	golgi, plastid	45.71	47.91
AT5G67210.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	45.71	47.0
CDX81329	Canola	plastid	44.17	46.75
CDY12819	Canola	golgi, mitochondrion, plasma membrane, plastid	45.09	46.67
KRH77040	Soybean	mitochondrion	43.25	46.38
Bra012143.1-P	Field mustard	plastid	44.79	46.35
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	46.01	46.3
CDY17753	Canola	endoplasmic reticulum, golgi	46.01	46.3
CDY30600	Canola	endoplasmic reticulum, golgi	46.01	46.3
KRH28432	Soybean	mitochondrion	43.56	46.1
CDY01429	Canola	golgi, mitochondrion, plasma membrane, plastid	44.48	46.03
AT3G50220.1	Thale cress	endoplasmic reticulum, golgi	45.09	45.65
KRH70689	Soybean	plastid	45.09	45.51
Os02t0158500-00	Rice	plastid	53.68	44.64
KRH04549	Soybean	plastid	42.33	43.81
KRH57814	Soybean	mitochondrion	42.33	43.67
Bra013107.1-P	Field mustard	plastid	42.02	41.77
CDY13145	Canola	plastid	41.72	41.46
CDX89660	Canola	plastid	41.72	41.09
CDY62313	Canola	plastid	39.57	40.31
AT2G15440.1	Thale cress	plastid	40.18	39.82
CDY37228	Canola	plastid	39.26	39.63
Bra039840.1-P	Field mustard	plastid	39.26	39.38
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	33.13	38.71
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	28.53	36.9
GSMUA_Achr9P01440_001	Banana	golgi	27.3	33.97
GSMUA_Achr3P19550_001	Banana	mitochondrion	29.75	33.8
GSMUA_Achr9P01430_001	Banana	extracellular	29.14	32.99
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi	25.46	32.3

Protein Annotations

EnsemblPlants:GSMUA_Achr6P29610_001	EnsemblPlants:GSMUA_Achr6T29610_001	EnsemblPlantsGene:GSMUA_Achr6G29610_001	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0045492
InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF0	PFAM:PF04669	SEG:seg
TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI0002949101	UniProt:M0TBA6	MapMan:35.1	:

Description

plant-specific domain TIGR01627 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G29610_001]

Coordinates

chr6:+:29820897..29821877

Molecular Weight (calculated)

35685.4 Da

IEP (calculated)

8.566

GRAVY (calculated)

-0.123

Length

326 amino acids

Sequence
(BLAST)

001: MKGVSSTKLM YPQPSSNHKH GGNGISNSVS YRRRIWLVAF LFFFAFVSIL TLHNPTGARD PSGLPSSSAS SHAAVGSAAA ATSWPTPLPA LVFDALVHYA
101: VASNYTWKME EDGLRAIAGV LRRRGPCNLL VFGIGHETPL WRALNQGGRT VFVDENEYYV AHMEARNPGL EAYDVAYTTK VREMPELLAE SRRQRRGECR
201: PVQNLLFSDC RLAINDLPNQ LYDVAWDVIL IDGPKGHEAA APGRMSAIFT AAVMARYRGR GPVDVLVHDY DRAVERLCSA EFLCSENLVA ASSRLAHFLI
301: RSSVGPTNEF CTSRTTTAYG AATSSS

Best Arabidopsis Sequence Match ( AT5G67210.1 )
(BLAST)

001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA

Arabidopsis Description

IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.