Factsheet for Bra034460.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, vacuole

Predictor Summary:

plastid 1
extracellular 3
golgi 4
plasma membrane 4
endoplasmic reticulum 3
vacuole 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026434.1-P
Bra027174.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G33800.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G33800.1	Bra027174.1-P	AT3G16310.1	21798944
AT1G33800.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48797	Canola	golgi, plasma membrane	99.66	99.66
Bra028013.1-P	Field mustard	golgi	92.93	93.24
AT1G33800.1	Thale cress	golgi, plasma membrane	91.58	91.58
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	63.64	63.0
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	57.58	60.85
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	58.92	59.52
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	60.61	58.44
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	53.87	57.35
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	55.56	55.74
KRH64803	Soybean	golgi, plasma membrane	57.24	55.56
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	46.46	54.76
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	44.44	54.55
Solyc06g064800.1.1	Tomato	extracellular, golgi	46.8	52.65
TraesCS5D01G319700.1	Wheat	mitochondrion	50.51	50.34
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	50.84	50.33
TraesCS5B01G313900.1	Wheat	golgi, unclear	50.51	50.0
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	50.84	50.0
TraesCS5A01G313000.1	Wheat	mitochondrion	50.17	49.83
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	50.17	49.5
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	50.51	49.02
EES16857	Sorghum	mitochondrion	49.16	48.18
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	46.46	46.78
HORVU7Hr1G120340.1	Barley	plastid	50.84	42.3
Bra034005.1-P	Field mustard	endoplasmic reticulum, golgi	40.74	42.01
TraesCS4D01G086700.1	Wheat	mitochondrion	45.45	41.41
TraesCS4A01G227100.1	Wheat	mitochondrion	45.12	41.36
TraesCS4B01G089200.1	Wheat	mitochondrion	44.78	41.18
Bra032854.1-P	Field mustard	endoplasmic reticulum	39.39	40.48
Bra004093.1-P	Field mustard	endoplasmic reticulum, golgi	39.39	40.21
Bra030066.1-P	Field mustard	endoplasmic reticulum, plasma membrane	39.06	40.14
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	45.79	38.42
Bra013845.1-P	Field mustard	cytosol	22.22	36.87
Os11t0242600-00	Rice	mitochondrion	38.05	35.76
EES08266	Sorghum	mitochondrion	39.39	35.67
Bra012143.1-P	Field mustard	plastid	30.98	29.21
Bra039840.1-P	Field mustard	plastid	31.31	28.62
Bra013107.1-P	Field mustard	plastid	30.98	28.05
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	30.3	27.78
Bra019203.1-P	Field mustard	plastid	27.27	25.96

Protein Annotations

MapMan:21.2.2.2.3	EnsemblPlantsGene:Bra034460	EnsemblPlants:Bra034460.1	EnsemblPlants:Bra034460.1-P	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	UniProt:M4F067	PFAM:PF04669	PANTHER:PTHR31444	PANTHER:PTHR31444:SF2
InterPro:Polysacc_synth_dom	TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI000254805A	SEG:seg	:

Description

AT1G33800 (E=1e-146) | unknown protein

Coordinates

chrA05:-:14246568..14247529

Molecular Weight (calculated)

33749.0 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.468

Length

297 amino acids

Sequence
(BLAST)

001: MRTKSQSSVN LKVIFTCCSI LIFLIIFFAR SNISSSSSKP LSETNLSQEE VENQHKPKGC PTTQQCTKMP ISLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDKAWI ETVTNKFPNL ESYHVVYDTK VKNSDKLMEL GRSEECTSVT DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARTGRPFCP VDVDRRR

Best Arabidopsis Sequence Match ( AT1G33800.1 )
(BLAST)

001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR

Arabidopsis Description

GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
SUBAcon: [golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.