Factsheet for VIT_00s0238g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_09s0002g03770.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G33800.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT1G33800.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	68.33	84.71
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	66.67	68.03
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	68.33	66.56
KRH64803	Soybean	golgi, plasma membrane	66.67	65.36
VIT_12s0035g01340.t01	Wine grape	golgi	61.0	64.44
CDY48797	Canola	golgi, plasma membrane	63.33	63.97
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	63.0	63.64
Bra028013.1-P	Field mustard	golgi	62.67	63.51
CDX93751	Canola	golgi	62.67	63.51
CDY15292	Canola	golgi	62.67	63.51
AT4G09990.1	Thale cress	golgi	61.0	63.1
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	61.0	63.1
AT1G33800.1	Thale cress	golgi, plasma membrane	61.67	62.29
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	56.67	60.93
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	50.0	59.52
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	55.0	55.93
CDX96332	Canola	endoplasmic reticulum, extracellular	55.0	55.74
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	55.0	55.74
CDX72815	Canola	endoplasmic reticulum, extracellular	54.33	54.15
Solyc06g064800.1.1	Tomato	extracellular, golgi	47.0	53.41
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	52.33	52.16
TraesCS5D01G319700.1	Wheat	mitochondrion	51.33	51.68
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	52.0	51.66
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	50.67	51.53
TraesCS5A01G313000.1	Wheat	mitochondrion	51.33	51.51
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	51.33	51.33
TraesCS5B01G313900.1	Wheat	golgi, unclear	51.33	51.33
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	51.67	50.65
EES16857	Sorghum	mitochondrion	50.0	49.51
CDY37946	Canola	extracellular	43.33	49.06
HORVU7Hr1G120340.1	Barley	plastid	52.67	44.26
TraesCS4A01G227100.1	Wheat	mitochondrion	44.33	41.05
TraesCS4B01G089200.1	Wheat	mitochondrion	44.0	40.87
TraesCS4D01G086700.1	Wheat	mitochondrion	44.33	40.8
VIT_01s0010g03680.t01	Wine grape	endoplasmic reticulum, golgi	38.0	40.57
VIT_14s0068g01970.t01	Wine grape	endoplasmic reticulum, plasma membrane	37.0	39.36
VIT_03s0063g00030.t01	Wine grape	plastid	28.67	39.09
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	43.67	37.01
Os11t0242600-00	Rice	mitochondrion	38.0	36.08
EES08266	Sorghum	mitochondrion	38.0	34.76
VIT_07s0031g00110.t01	Wine grape	golgi	30.67	29.68

Protein Annotations

EntrezGene:100255018	wikigene:100255018	MapMan:21.2.2.2.3	ProteinID:CBI40958	ProteinID:CBI40958.3	UniProt:D7UDZ3
EMBL:FN596774	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	EntrezGene:LOC100255018	wikigene:LOC100255018	PFAM:PF04669	PANTHER:PTHR31444
PANTHER:PTHR31444:SF2	InterPro:Polysacc_synth_dom	TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI00015C9CD4	ArrayExpress:VIT_00s0238g00020
EnsemblPlantsGene:VIT_00s0238g00020	EnsemblPlants:VIT_00s0238g00020.t01	unigene:Vvi.16081	RefSeq:XP_002279765	RefSeq:XP_002279765.1	SEG:seg

Description

No Description!

Coordinates

chrUn:+:16173328..16175002

Molecular Weight (calculated)

33949.7 Da

IEP (calculated)

6.431

GRAVY (calculated)

-0.281

Length

300 amino acids

Sequence
(BLAST)

001: MRPSKPQTSI NLKLILVCFL CLLLFLLVFK SNFTPFQENH PSPILETHVS NSTSTPAAEE QPPSRDCPSL PLTPTCTKTP PSLAQALVHY ATLNITPQQT
101: FNEISVSLRV LQKKAPCNFL VFGLGHDSLM WTALNHGGRT IFLEEDKSWI EQIKQKLPSL ESYHVVYDSK VHQADELMEV GMGEDCKVVV DPRFSKCKLS
201: LKGFPNEVYD VEWDLIMVDA PTGYHDEAPG RMSAIYTAGL MARNREDGET DVFVHDVDRV VEDKFSKAFL CEGYFREQEG RIRHFTIPSH RTRSGRSFCP

Best Arabidopsis Sequence Match ( AT1G33800.1 )
(BLAST)

001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR

Arabidopsis Description

GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.