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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • plastid 1
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 5
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX84933
CDX89333
CDX94330
CDX97739
CDY03907
CDY15722
CDY27605
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G33800.1 CDX84933 AT1G27300.1 21798944
AT1G33800.1 CDY03907 AT1G27300.1 21798944
AT1G33800.1 CDY15722 AT1G27300.1 21798944
AT1G33800.1 CDY27605 AT1G27300.1 21798944
AT1G33800.1 CDX97739 AT3G16310.1 21798944
AT1G33800.1 CDY30157 AT3G16310.1 21798944
AT1G33800.1 CDX89333 AT4G26455.1 21798944
AT1G33800.1 CDX94330 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028013.1-P Field mustard golgi 100.0 100.0
CDY15292 Canola golgi 99.66 99.66
CDY48797 Canola golgi, plasma membrane 93.58 93.27
AT1G33800.1 Thale cress golgi, plasma membrane 90.88 90.57
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 63.51 62.67
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 56.76 59.79
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 59.12 59.52
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 55.74 58.72
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 60.81 58.44
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 54.73 58.06
CDX96332 Canola endoplasmic reticulum, extracellular 56.42 56.42
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 47.3 55.56
KRH64803 Soybean golgi, plasma membrane 56.42 54.58
CDX72815 Canola endoplasmic reticulum, extracellular 55.41 54.49
Solyc06g064800.1.1 Tomato extracellular, golgi 48.31 54.17
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 44.26 54.13
TraesCS5D01G319700.1 Wheat mitochondrion 50.68 50.34
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 51.01 50.33
TraesCS7A01G560100.1 Wheat mitochondrion, plastid 51.01 50.0
TraesCS5B01G313900.1 Wheat golgi, unclear 50.68 50.0
TraesCS7B01G485000.1 Wheat mitochondrion, plastid 50.68 49.83
TraesCS5A01G313000.1 Wheat mitochondrion 50.34 49.83
CDY37946 Canola extracellular 43.92 49.06
TraesCS7D01G549800.1 Wheat mitochondrion, plastid 50.68 49.02
EES16857 Sorghum mitochondrion 49.66 48.51
Os12t0204500-01 Rice endoplasmic reticulum, golgi 46.96 47.12
CDY51186 Canola endoplasmic reticulum, plasma membrane 42.57 42.71
CDY12639 Canola endoplasmic reticulum, golgi 41.55 42.71
HORVU7Hr1G120340.1 Barley plastid 51.35 42.58
CDY28894 Canola endoplasmic reticulum, golgi 40.88 41.58
CDY27638 Canola endoplasmic reticulum 40.54 41.52
CDX84898 Canola endoplasmic reticulum 40.54 41.52
CDY07428 Canola endoplasmic reticulum, golgi 40.54 41.24
TraesCS4D01G086700.1 Wheat mitochondrion 44.93 40.8
TraesCS4A01G227100.1 Wheat mitochondrion 44.59 40.74
TraesCS4B01G089200.1 Wheat mitochondrion 44.26 40.56
HORVU4Hr1G015310.3 Barley endoplasmic reticulum, plastid 45.27 37.85
EES08266 Sorghum mitochondrion 40.54 36.59
Os11t0242600-00 Rice mitochondrion 38.51 36.08
CDY12819 Canola golgi, mitochondrion, plasma membrane, plastid 30.41 28.57
CDX81329 Canola plastid 29.73 28.57
CDY01429 Canola golgi, mitochondrion, plasma membrane, plastid 30.07 28.25
CDY37228 Canola plastid 30.41 27.86
CDY62313 Canola plastid 29.73 27.5
CDY30600 Canola endoplasmic reticulum, golgi 30.07 27.47
CDY17753 Canola endoplasmic reticulum, golgi 30.07 27.47
CDY03407 Canola plastid 28.72 27.33
CDY13145 Canola plastid 30.07 27.13
CDX89660 Canola plastid 30.07 26.89
CDY34323 Canola plastid 28.04 26.86
CDX92660 Canola plastid 25.68 24.36
Protein Annotations
EnsemblPlants:CDX93751EnsemblPlantsGene:GSBRNA2T00156477001GO:A0A078DWT4GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0045492InterPro:IRX15/IRX15L/IGXMInterPro:Polysacc_synth_domPANTHER:PTHR31444
PANTHER:PTHR31444:SF2PFAM:PF04669ProteinID:CDX93751ProteinID:CDX93751.1TIGRFAMs:TIGR01627TMHMM:TMhelix
UniParc:UPI00025421F2MapMan:21.2.2.2.3::::
Description
BnaA09g23510D
Coordinates
chrLK031877:-:411620..412768
Molecular Weight (calculated)
33694.1 Da
IEP (calculated)
7.739
GRAVY (calculated)
-0.489
Length
296 amino acids
Sequence
(BLAST)
001: MRTKSQSSVN LKVIFTCCSI LIFLVIFFAR SNISSSKPIS KTNLSQEKEE QDQAKPEGCP TTQQCTKMPI SLSDALVHYA TSNVTPQQTF DEISVSKRVL
101: DKKSPCNFLV FGLGHDSPMW ASLNHGGRTL FIEEDKAWIE IVTKKFPNLE AYHVVYDTKV KHSDKLMELG RSEECRSVTD PRNSKCELAL KDFPADFYET
201: KWDLIMVDAP TGYHEEAPGR MSAIYTAGLL ARNREDGETD VFVHDVNRPV EDEFSATFLC KGYMREQNGR LRHFTIPSHR ARAGRPFCPV DVNRRR
Best Arabidopsis Sequence Match ( AT1G33800.1 )
(BLAST)
001: MRTKSPSSLN LKVIFIGSSI LILIIIYLAR SNISSSSSKP ISKTNLSQEE EETQHKQEGC PTTQQCTKMP LSLSDALVHY VTSNVTPQQT FDEVSVSKRV
101: LDKKSPCNFL VFGLGHDSLM WASLNHGGRT LFIEEDQAWI AIVTKKFPNL ESYHVVYDTK VKDSDKLMEL GRSEECRSVS DPRNSKCDLA LKDFPADFYE
201: TKWDLIMVDA PTGYHEEAPG RMSAIYTAGL LARNREDGET DVFVHDVNRP VEDEFSATFL CKGYMREQNG RLRHFTIPSH RARAGRPFCP VEVDRRR
Arabidopsis Description
GXM3GXMT1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7W0]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.