Factsheet for PGSC0003DMT400045531

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400067509

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48810.1	PGSC0003DMT400067509	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061230.2.1	Tomato	cytosol	98.5	98.5
PGSC0003DMT400003091	Potato	cytosol	88.72	87.41
PGSC0003DMT400051945	Potato	cytosol	84.21	84.85
VIT_07s0005g06290.t01	Wine grape	cytosol	81.2	81.2
GSMUA_Achr6P06700_001	Banana	cytosol	75.94	75.37
EES02143	Sorghum	cytosol	75.94	74.81
GSMUA_Achr3P19410_001	Banana	cytosol	75.19	74.63
TraesCS5D01G152500.1	Wheat	golgi	74.44	73.88
TraesCS5A01G138900.1	Wheat	cytosol, golgi	74.44	73.88
Os01t0971500-01	Rice	cytosol, plasma membrane	74.44	73.33
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	73.68	73.13
TraesCS5B01G138200.1	Wheat	cytosol, golgi	72.93	72.39
Os05t0108800-01	Rice	plasma membrane	74.44	72.26
EES17559	Sorghum	cytosol	72.18	72.18
KRG99780	Soybean	cytosol	74.44	71.74
CDX86279	Canola	cytosol	74.44	71.74
CDX85364	Canola	cytosol	74.44	71.74
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	73.68	71.53
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	73.68	71.53
AT5G48810.1	Thale cress	cytosol	75.19	71.43
Bra037461.1-P	Field mustard	cytosol	73.68	71.01
Bra036160.1-P	Field mustard	cytosol	74.44	70.71
CDY19937	Canola	cytosol	74.44	70.71
CDY00045	Canola	cytosol	74.44	70.71
KRH46744	Soybean	endoplasmic reticulum	74.44	69.72
PGSC0003DMT400013956	Potato	cytosol	66.92	66.42
PGSC0003DMT400047688	Potato	cytosol	63.16	62.69
HORVU3Hr1G114360.3	Barley	plasma membrane	72.93	56.07
PGSC0003DMT400000362	Potato	cytosol	55.64	56.06
PGSC0003DMT400019916	Potato	cytosol	45.86	42.96
GSMUA_AchrUn_...	Banana	mitochondrion	69.17	37.55
PGSC0003DMT400072748	Potato	cytosol	36.84	36.84
PGSC0003DMT400055458	Potato	cytosol	38.35	34.69
Zm00001d035685_P001	Maize	mitochondrion	37.59	32.26

Protein Annotations

EntrezGene:102586188	MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400	UniProt:M1BHT6	PFAM:PF00173	EnsemblPlantsGene:PGSC0003DMG400017661
PGSC:PGSC0003DMG400017661	EnsemblPlants:PGSC0003DMT400045531	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359
PANTHER:PTHR19359:SF69	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI0002951674	RefSeq:XP_006356775.1
SEG:seg	:	:	:	:	:

Description

Cytochrome b5 [Source:PGSC_GENE;Acc:PGSC0003DMG400017661]

Coordinates

chr9:+:43857410..43861563

Molecular Weight (calculated)

14700.3 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.226

Length

133 amino acids

Sequence
(BLAST)

001: MAKVYTLAEV SQHNSAKDCW LVISGKVYDV TKFLDDHPGG DEVLISSTGK DATDDFEDVG HSSSARAMLD EYYVGDIDSA TIPTKTKYTP PKQPQYNQDK
101: TSEFVVKLLQ FLVPLIILGV AFGIRFYTKQ SAA

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.