Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400067509 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26340.1 | PGSC0003DMT400067509 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g012080.2.1 | Tomato | cytosol, plastid | 97.74 | 97.74 |
| VIT_01s0011g00210.t01 | Wine grape | cytosol | 70.68 | 70.15 |
| AT1G26340.1 | Thale cress | cytosol | 70.68 | 69.63 |
| Bra024721.1-P | Field mustard | cytosol | 69.17 | 68.15 |
| CDY16153 | Canola | cytosol | 69.17 | 68.15 |
| CDX85016 | Canola | cytosol | 68.42 | 67.41 |
| KRH53553 | Soybean | cytosol | 60.9 | 66.94 |
| EER93435 | Sorghum | cytosol | 62.41 | 62.41 |
| TraesCS5D01G401800.1 | Wheat | cytosol | 63.16 | 62.22 |
| TraesCS5A01G391900.1 | Wheat | cytosol | 63.16 | 62.22 |
| TraesCS5B01G396800.1 | Wheat | cytosol | 62.41 | 61.48 |
| GSMUA_Achr2P13570_001 | Banana | cytosol | 60.9 | 60.9 |
| Zm00001d034048_P003 | Maize | cytosol | 59.4 | 56.43 |
| Zm00001d013257_P002 | Maize | plastid | 60.9 | 54.0 |
| HORVU5Hr1G095930.3 | Barley | endoplasmic reticulum | 53.38 | 47.02 |
| PGSC0003DMT400000362 | Potato | cytosol | 41.35 | 41.67 |
| PGSC0003DMT400047688 | Potato | cytosol | 41.35 | 41.04 |
| PGSC0003DMT400003091 | Potato | cytosol | 40.6 | 40.0 |
| PGSC0003DMT400051945 | Potato | cytosol | 39.1 | 39.39 |
| PGSC0003DMT400013956 | Potato | cytosol | 39.1 | 38.81 |
| PGSC0003DMT400045531 | Potato | cytosol | 36.84 | 36.84 |
| PGSC0003DMT400055458 | Potato | cytosol | 37.59 | 34.01 |
| PGSC0003DMT400019916 | Potato | cytosol | 30.08 | 28.17 |
Protein Annotations
| EntrezGene:102589339 | MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 |
| GO:GO:0046872 | InterPro:IPR001199 | InterPro:IPR036400 | UniProt:M1CQV9 | PFAM:PF00173 | EnsemblPlantsGene:PGSC0003DMG400028310 |
| PGSC:PGSC0003DMG400028310 | EnsemblPlants:PGSC0003DMT400072748 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 |
| PANTHER:PTHR19359:SF25 | SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | UniParc:UPI0002951A38 | RefSeq:XP_006348668.1 |
| SEG:seg | : | : | : | : | : |
Description
Cytochrome b5 isoform Cb5-D [Source:PGSC_GENE;Acc:PGSC0003DMG400028310]
Coordinates
chr5:-:695283..698657
Molecular Weight (calculated)
14810.5 Da
IEP (calculated)
4.400
GRAVY (calculated)
-0.238
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTLTKLFTM EEAAEHNTKD DCWVVIDGKV YDVSSYLDEH PGGDDVLLGV TGQDATDEFE DAGHSKSARE LMEKFFIGEL DTTSSSIPEL EIVKKAGKDI
101: PQKFMEVTKQ YWFVPVAAVG ISVVVGFLYT RKK
101: PQKFMEVTKQ YWFVPVAAVG ISVVVGFLYT RKK
001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
Arabidopsis Description
CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.