Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- vacuole 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s1665g00010.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26340.1 | VIT_00s1665g00010.t01 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g012080.2.1 | Tomato | cytosol, plastid | 71.64 | 72.18 |
| PGSC0003DMT400072748 | Potato | cytosol | 70.15 | 70.68 |
| AT1G26340.1 | Thale cress | cytosol | 70.15 | 69.63 |
| KRH53553 | Soybean | cytosol | 60.45 | 66.94 |
| CDX85016 | Canola | cytosol | 67.16 | 66.67 |
| Bra024721.1-P | Field mustard | cytosol | 66.42 | 65.93 |
| CDY16153 | Canola | cytosol | 66.42 | 65.93 |
| GSMUA_Achr2P13570_001 | Banana | cytosol | 59.7 | 60.15 |
| TraesCS5A01G391900.1 | Wheat | cytosol | 60.45 | 60.0 |
| TraesCS5B01G396800.1 | Wheat | cytosol | 59.7 | 59.26 |
| TraesCS5D01G401800.1 | Wheat | cytosol | 59.7 | 59.26 |
| EER93435 | Sorghum | cytosol | 58.21 | 58.65 |
| Zm00001d034048_P003 | Maize | cytosol | 55.97 | 53.57 |
| Zm00001d013257_P002 | Maize | plastid | 58.21 | 52.0 |
| HORVU5Hr1G095930.3 | Barley | endoplasmic reticulum | 50.0 | 44.37 |
| VIT_07s0005g06290.t01 | Wine grape | cytosol | 41.04 | 41.35 |
| VIT_16s0098g01230.t01 | Wine grape | cytosol | 39.55 | 39.55 |
| VIT_18s0001g09400.t01 | Wine grape | mitochondrion | 36.57 | 33.33 |
| VIT_09s0002g03420.t01 | Wine grape | cytosol | 23.88 | 32.65 |
Protein Annotations
| EntrezGene:100250986 | wikigene:100250986 | MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | ProteinID:CBI27309 | ProteinID:CBI27309.3 |
| InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | UniProt:D7T9Y7 | EMBL:FN595752 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | GO:GO:0046872 |
| InterPro:IPR001199 | InterPro:IPR036400 | EntrezGene:LOC100250986 | wikigene:LOC100250986 | PFAM:PF00173 | PRINTS:PR00363 |
| ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF25 | SMART:SM01117 | SUPFAM:SSF55856 |
| TIGR:TC57436 | TMHMM:TMhelix | UniParc:UPI00015C7C56 | ArrayExpress:VIT_01s0011g00210 | EnsemblPlantsGene:VIT_01s0011g00210 | EnsemblPlants:VIT_01s0011g00210.t01 |
| unigene:Vvi.14871 | unigene:Vvi.8208 | RefSeq:XP_002264175 | RefSeq:XP_002264175.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:+:297114..301962
Molecular Weight (calculated)
14787.6 Da
IEP (calculated)
4.599
GRAVY (calculated)
-0.201
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTLTKLFSM QEASLHNSKD DCWVVIDGKV YDVTTYLDEH PGGDDVILAT TGKDATDDFE DAGHSNDARE LMKSFCVGEL DMSSPAIPEL KISDKKQQTD
101: VAQKLLNLTK QYWAVSVAIV GISVVAGFLF MRKK
101: VAQKLLNLTK QYWAVSVAIV GISVVAGFLF MRKK
001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
Arabidopsis Description
CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.