Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G401800.1 | Wheat | cytosol | 98.52 | 98.52 |
| TraesCS5B01G396800.1 | Wheat | cytosol | 94.81 | 94.81 |
| EER93435 | Sorghum | cytosol | 80.74 | 81.95 |
| Zm00001d034048_P003 | Maize | cytosol | 80.74 | 77.86 |
| Zm00001d013257_P002 | Maize | plastid | 80.0 | 72.0 |
| HORVU5Hr1G095930.3 | Barley | endoplasmic reticulum | 80.0 | 71.52 |
| Solyc05g012080.2.1 | Tomato | cytosol, plastid | 62.96 | 63.91 |
| PGSC0003DMT400072748 | Potato | cytosol | 62.22 | 63.16 |
| KRH53553 | Soybean | cytosol | 55.56 | 61.98 |
| Bra024721.1-P | Field mustard | cytosol | 60.74 | 60.74 |
| CDY16153 | Canola | cytosol | 60.74 | 60.74 |
| CDX85016 | Canola | cytosol | 60.74 | 60.74 |
| VIT_01s0011g00210.t01 | Wine grape | cytosol | 60.0 | 60.45 |
| GSMUA_Achr2P13570_001 | Banana | cytosol | 59.26 | 60.15 |
| AT1G26340.1 | Thale cress | cytosol | 58.52 | 58.52 |
| TraesCS1A01G181500.1 | Wheat | cytosol, golgi | 37.78 | 38.06 |
| TraesCS3A01G524000.2 | Wheat | cytosol, golgi, plastid | 37.04 | 36.5 |
| TraesCS6A01G240700.1 | Wheat | cytosol, golgi, mitochondrion | 37.04 | 35.46 |
| TraesCS5A01G138900.1 | Wheat | cytosol, golgi | 33.33 | 33.58 |
| TraesCS7A01G437700.1 | Wheat | cytosol | 32.59 | 29.53 |
| TraesCS5A01G185800.1 | Wheat | endoplasmic reticulum, extracellular | 23.7 | 27.12 |
Protein Annotations
| MapMan:21.9.1.7.1.3 | Gene3D:3.10.120.10 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009536 |
| GO:GO:0009707 | GO:GO:0010319 | GO:GO:0016020 | GO:GO:0020037 | InterPro:IPR001199 | InterPro:IPR036400 |
| PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF25 |
| SMART:SM01117 | SUPFAM:SSF55856 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS5A01G391900 | EnsemblPlants:TraesCS5A01G391900.1 | : |
Description
No Description!
Coordinates
chr5A:+:588371704..588373242
Molecular Weight (calculated)
15008.8 Da
IEP (calculated)
4.197
GRAVY (calculated)
-0.186
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTLTKLYSM KEAALHNTPD DCWIVVDGKI YDVTAYLDDH PGGADVLLAV TGMDGTEEFE DAGHSKDAKE LMKDYFIGEL DLDETPDMPE MEVFRKEQDK
101: DFASKLAAYA VQYWAIPVAA VGISAVLAIL YARRK
101: DFASKLAAYA VQYWAIPVAA VGISAVLAIL YARRK
001: MPTLTKLYSM EEAATHNKQD DCWVVIDGKV YDVSSYMDEH PGGDDVLLAV AGKDATDDFE DAGHSKDARE LMEKYFIGEL DESSLPEIPE LKIYKKDQPQ
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
101: DSVQKLFDLT KQYWVVPVSI ITISVAVSVL FSRKT
Arabidopsis Description
CB5-ACB5-A [Source:UniProtKB/TrEMBL;Acc:A0A178WMK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.