Factsheet for PGSC0003DMT400019916

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400067509	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	PGSC0003DMT400067509	AT5G47120.1	19054355
AT2G32720.1	PGSC0003DMT400067509	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098320.1.1	Tomato	cytosol	40.14	80.28
PGSC0003DMT400051945	Potato	cytosol	46.48	50.0
PGSC0003DMT400003091	Potato	cytosol	45.77	48.15
Bra021809.1-P	Field mustard	cytosol	44.37	47.01
CDY19161	Canola	cytosol	44.37	47.01
CDY23792	Canola	cytosol	44.37	47.01
GSMUA_Achr3P19410_001	Banana	cytosol	43.66	46.27
PGSC0003DMT400045531	Potato	cytosol	42.96	45.86
AT2G32720.1	Thale cress	cytosol	42.96	45.52
CDX79471	Canola	cytosol	42.25	44.78
PGSC0003DMT400047688	Potato	cytosol	42.25	44.78
PGSC0003DMT400013956	Potato	cytosol	42.25	44.78
Bra005564.1-P	Field mustard	cytosol	41.55	44.03
TraesCS5D01G152500.1	Wheat	golgi	41.55	44.03
Bra022898.1-P	Field mustard	cytosol	41.55	44.03
CDX84725	Canola	cytosol	41.55	44.03
Os05t0108800-01	Rice	plasma membrane	42.25	43.8
Os01t0971500-01	Rice	cytosol, plasma membrane	41.55	43.7
CDY59638	Canola	cytosol	40.85	43.28
GSMUA_Achr6P06700_001	Banana	cytosol	40.85	43.28
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	40.85	43.28
EES17559	Sorghum	cytosol	40.14	42.86
TraesCS5A01G138900.1	Wheat	cytosol, golgi	39.44	41.79
TraesCS5B01G138200.1	Wheat	cytosol, golgi	39.44	41.79
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	40.14	41.61
EES02143	Sorghum	cytosol	39.44	41.48
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	38.73	40.15
PGSC0003DMT400000362	Potato	cytosol	35.92	38.64
CDY12180	Canola	cytosol	40.85	37.18
HORVU3Hr1G114360.3	Barley	plasma membrane	39.44	32.37
PGSC0003DMT400072748	Potato	cytosol	28.17	30.08
PGSC0003DMT400055458	Potato	cytosol	26.76	25.85
GSMUA_AchrUn_...	Banana	mitochondrion	43.66	25.31

Protein Annotations

EntrezGene:102587925	MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0043447	GO:GO:0046872	InterPro:IPR001199	InterPro:IPR036400
UniProt:M1ACS1	PFAM:PF00173	EnsemblPlantsGene:PGSC0003DMG400007706	PGSC:PGSC0003DMG400007706	EnsemblPlants:PGSC0003DMT400019916	PRINTS:PR00363
ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF69	SMART:SM01117	SUPFAM:SSF55856
TMHMM:TMhelix	UniParc:UPI0002962EF6	RefSeq:XP_006349932.1	:	:	:

Description

Cytochrome b5 [Source:PGSC_GENE;Acc:PGSC0003DMG400007706]

Coordinates

chr12:-:59136977..59138476

Molecular Weight (calculated)

15817.7 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.247

Length

142 amino acids

Sequence
(BLAST)

001: MGVDNKVLKT YDEVSLHNNP KDCWVIINAK AYNVTNFLND HPGGEEVLLA AAGKDASEEF EEAGHGSAAR LMLDEFYVGE IDPSTKINAT LDTTSSTNFL
101: EKHNKIDYYQ GKSSRQNNVK LLQFLVPIVI LLLGSTLFKF LH

Best Arabidopsis Sequence Match ( AT5G48810.1 )
(BLAST)

001: MGGDGKVFTL SEVSQHSSAK DCWIVIDGKV YDVTKFLDDH PGGDEVILTS TGKDATDDFE DVGHSSTAKA MLDEYYVGDI DTATVPVKAK FVPPTSTKAV
101: ATQDKSSDFV IKLLQFLVPL LILGLAFGIR YYTKTKAPSS

Arabidopsis Description

CYTB5-DCytochrome B5 isoform D [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.