Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g090000.1.1 | cytosol |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G32720.1 | Solyc01g090000.1.1 | AT5G47120.1 | 19054355 |
| AT2G32720.1 | Solyc01g090000.1.1 | AT5G47120.1 | 19054355 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053170.2.1 | Tomato | cytosol, plastid | 23.94 | 43.59 |
| PGSC0003DMT400019916 | Potato | cytosol | 80.28 | 40.14 |
| Solyc06g083440.2.1 | Tomato | cytosol | 50.7 | 27.07 |
| Solyc06g007930.2.1 | Tomato | cytosol, endoplasmic reticulum, plastid, unclear | 50.7 | 26.67 |
| Solyc09g061230.2.1 | Tomato | cytosol | 47.89 | 25.56 |
| Bra021809.1-P | Field mustard | cytosol | 47.89 | 25.37 |
| CDY19161 | Canola | cytosol | 47.89 | 25.37 |
| CDY23792 | Canola | cytosol | 47.89 | 25.37 |
| AT2G32720.1 | Thale cress | cytosol | 45.07 | 23.88 |
| CDX79471 | Canola | cytosol | 45.07 | 23.88 |
| Solyc12g008470.1.1 | Tomato | mitochondrion | 28.17 | 23.81 |
| CDY59638 | Canola | cytosol | 43.66 | 23.13 |
| CDX84725 | Canola | cytosol | 43.66 | 23.13 |
| Bra022898.1-P | Field mustard | cytosol | 43.66 | 23.13 |
| Bra005564.1-P | Field mustard | cytosol | 43.66 | 23.13 |
| CDY12180 | Canola | cytosol | 43.66 | 19.87 |
| Solyc05g012080.2.1 | Tomato | cytosol, plastid | 36.62 | 19.55 |
| Solyc03g082600.2.1 | Tomato | plastid | 46.48 | 17.37 |
| Solyc04g078140.2.1 | Tomato | cytosol | 35.21 | 16.89 |
| Solyc06g053180.2.1 | Tomato | plastid | 4.23 | 3.53 |
Protein Annotations
| Gene3D:3.10.120.10 | MapMan:35.2 | InterPro:Cyt_B5-like_heme/steroid-bd | InterPro:Cyt_B5-like_heme/steroid_sf | InterPro:Cyt_B5_heme-BS | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0020037 | GO:GO:0046872 | InterPro:IPR001199 | InterPro:IPR036400 | UniProt:K4DHK6 |
| PFAM:PF00173 | PRINTS:PR00363 | ScanProsite:PS00191 | PFscan:PS50255 | PANTHER:PTHR19359 | PANTHER:PTHR19359:SF69 |
| SMART:SM01117 | SUPFAM:SSF55856 | EnsemblPlantsGene:Solyc12g098320.1 | EnsemblPlants:Solyc12g098320.1.1 | UniParc:UPI000276A06D | SEG:seg |
Description
No Description!
Coordinates
chr12:-:65876051..65877634
Molecular Weight (calculated)
7881.4 Da
IEP (calculated)
6.787
GRAVY (calculated)
-0.456
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MGVDNKVLKT YDEVSLHNNP KDCWVIINAK AYNVTNFLND HPGGEEVLLA AAGARMQVKS LKKQDMGVHQ D
001: MSSDRKVLSF EEVSKHNKTK DCWLIISGKV YDVTPFMDDH PGGDEVLLSS TGKDATNDFE DVGHSDTARD MMDKYFIGEI DSSSVPATRT YVAPQQPAYN
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
101: QDKTPEFIIK ILQFLVPILI LGLALVVRHY TKKD
Arabidopsis Description
CYTB5-ECB5-E [Source:UniProtKB/TrEMBL;Acc:A0A178USU5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.