Factsheet for Os05t0108800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 19526560
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 19526560 doi

Y Cheng, Y Qi, Q Zhu, X Chen, N Wang, X Zhao, H Chen, X Cui, L Xu, W Zhang

Department of Biochemistry and Molecular Biology, College of Life Science, Nanjing Agricultural University, Nanjing, Jiangsu, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0125300-01	cytosol
Os12t0628400-01	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32720.1	Os12t0628400-01	AT2G34770.1	19054355
AT2G32720.1	Os12t0628400-01	AT2G34770.1	22635113
AT2G32720.1	Os12t0628400-01	AT2G34770.1	22635113
AT2G32720.1	Os02t0125300-01	AT5G47120.1	19054355
AT2G32720.1	Os02t0125300-01	AT5G47120.1	19054355
AT5G48810.1	Os02t0125300-01	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0971500-01	Rice	cytosol, plasma membrane	89.05	90.37
EES17559	Sorghum	cytosol	86.86	89.47
Zm00001d011081_P001	Maize	plasma membrane, plastid	86.13	88.72
GSMUA_Achr3P19410_001	Banana	cytosol	78.83	80.6
KRG99574	Soybean	cytosol, endoplasmic reticulum	76.64	77.78
Bra022898.1-P	Field mustard	cytosol	75.18	76.87
KRH66053	Soybean	endoplasmic reticulum	75.18	76.3
CDX79471	Canola	cytosol	74.45	76.12
CDX84725	Canola	cytosol	74.45	76.12
AT2G32720.1	Thale cress	cytosol	74.45	76.12
CDY23792	Canola	cytosol	74.45	76.12
VIT_07s0005g06290.t01	Wine grape	cytosol	73.72	75.94
PGSC0003DMT400051945	Potato	cytosol	72.99	75.76
Bra021809.1-P	Field mustard	cytosol	73.72	75.37
Bra005564.1-P	Field mustard	cytosol	73.72	75.37
CDY19161	Canola	cytosol	73.72	75.37
GSMUA_Achr6P06700_001	Banana	cytosol	72.99	74.63
CDY59638	Canola	cytosol	72.99	74.63
PGSC0003DMT400045531	Potato	cytosol	72.26	74.44
PGSC0003DMT400003091	Potato	cytosol	71.53	72.59
CDX86279	Canola	cytosol	68.61	68.12
CDX85364	Canola	cytosol	68.61	68.12
Bra037461.1-P	Field mustard	cytosol	67.88	67.39
CDY19937	Canola	cytosol	67.88	66.43
Bra036160.1-P	Field mustard	cytosol	67.15	65.71
CDY00045	Canola	cytosol	67.15	65.71
KRG99780	Soybean	cytosol	65.69	65.22
AT5G48810.1	Thale cress	cytosol	65.69	64.29
CDY12180	Canola	cytosol	72.99	64.1
KRH46744	Soybean	endoplasmic reticulum	64.96	62.68
Os10t0518200-01	Rice	plasma membrane, plastid	46.72	61.54
Solyc06g053180.2.1	Tomato	plastid	32.12	51.76
Os02t0649800-01	Rice	plasma membrane	45.26	44.93
PGSC0003DMT400019916	Potato	cytosol	43.8	42.25
GSMUA_AchrUn_...	Banana	mitochondrion	70.8	39.59
Os12t0223300-01	Rice	cytosol, peroxisome, plastid	43.07	39.33
Os09t0334600-00	Rice	mitochondrion	19.71	30.68
Os08t0386300-02	Rice	endoplasmic reticulum, extracellular	21.17	24.37

Protein Annotations

MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EntrezGene:4337583	ProteinID:AAK73138.1	ProteinID:AAU44139.1	EMBL:AK064821
ProteinID:BAF16348.1	ProteinID:BAS91901.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS	ProteinID:EEE62055.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0020037	GO:GO:0031090	GO:GO:0043231	GO:GO:0046872	GO:GO:0055114	UniProt:I3QD60
InterPro:IPR001199	InterPro:IPR036400	EMBL:JF969215	EnsemblPlantsGene:Os05g0108800	EnsemblPlants:Os05t0108800-01	UniProt:P49100
PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF66
SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00000A421A	EMBL:X75670	RefSeq:XP_015640330.1

Description

Cytochrome b5. (Os05t0108800-01)

Coordinates

chr5:+:492384..494192

Molecular Weight (calculated)

15283.1 Da

IEP (calculated)

4.938

GRAVY (calculated)

-0.384

Length

137 amino acids

Sequence
(BLAST)

001: MSNDNKKVYT LEEVAKHNSK DDCWLIIGGK VYNVSKFLED HPGGDDVLLS STGKDATDDF EDVGHSTTAR AMMDEYYVGD IDTSTIPART KYVPPKQPHY
101: NQDKTPEFII KILQFLVPLA ILGLAVAIRI YTKSESA

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.