CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 4
vacuole 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04210
KRH24687
KRH28186
KRH57502
KRH77301

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48810.1	KRH04210	AT5G47120.1	19054355
AT5G48810.1	KRH24687	AT5G47120.1	19054355
AT5G48810.1	KRH28186	AT5G47120.1	19054355
AT5G48810.1	KRH57502	AT5G47120.1	19054355
AT5G48810.1	KRH77301	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66053	Soybean	endoplasmic reticulum	98.52	98.52
VIT_07s0005g06290.t01	Wine grape	cytosol	80.0	81.2
Os01t0971500-01	Rice	cytosol, plasma membrane	78.52	78.52
GSMUA_Achr3P19410_001	Banana	cytosol	76.3	76.87
HORVU5Hr1G045040.1	Barley	cytosol, plasma membrane	76.3	76.87
Os05t0108800-01	Rice	plasma membrane	77.78	76.64
GSMUA_Achr6P06700_001	Banana	cytosol	75.56	76.12
EES02143	Sorghum	cytosol	75.56	75.56
TraesCS5A01G138900.1	Wheat	cytosol, golgi	74.81	75.37
TraesCS5D01G152500.1	Wheat	golgi	74.81	75.37
EES17559	Sorghum	cytosol	74.07	75.19
TraesCS3A01G524000.2	Wheat	cytosol, golgi, plastid	75.56	74.45
TraesCS5B01G138200.1	Wheat	cytosol, golgi	73.33	73.88
TraesCS3D01G529500.1	Wheat	cytosol, golgi, unclear	74.81	73.72
KRG99780	Soybean	cytosol	71.11	69.57
CDX85364	Canola	cytosol	68.15	66.67
CDX86279	Canola	cytosol	68.15	66.67
AT5G48810.1	Thale cress	cytosol	68.89	66.43
Bra037461.1-P	Field mustard	cytosol	67.41	65.94
CDY19937	Canola	cytosol	68.15	65.71
CDY00045	Canola	cytosol	68.15	65.71
Bra036160.1-P	Field mustard	cytosol	68.15	65.71
KRH46744	Soybean	endoplasmic reticulum	68.89	65.49
KRH64355	Soybean	endoplasmic reticulum	65.19	62.86
HORVU3Hr1G114360.3	Barley	plasma membrane	76.3	59.54
KRH68944	Soybean	cytosol	52.59	50.35
KRG97223	Soybean	endoplasmic reticulum	52.59	50.35
KRH47845	Soybean	endoplasmic reticulum	50.37	47.89
KRH06410	Soybean	cytosol	49.63	45.89
KRH53581	Soybean	endoplasmic reticulum	65.93	45.64
KRH61382	Soybean	cytosol	42.22	41.01
GSMUA_AchrUn_...	Banana	mitochondrion	73.33	40.41
KRH52065	Soybean	cytosol	40.74	40.15
KRH53553	Soybean	cytosol	34.81	38.84
Zm00001d035685_P001	Maize	mitochondrion	36.3	31.61
KRH74256	Soybean	endoplasmic reticulum, golgi	24.44	27.73
KRH07276	Soybean	endoplasmic reticulum, plasma membrane	22.96	20.26

Protein Annotations

EntrezGene:100500611	MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EMBL:ACUP02011139	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BS	EnsemblPlantsGene:GLYMA_18G154900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	UniProt:I1N1W2	InterPro:IPR001199	InterPro:IPR036400
EnsemblPlants:KRG99574	ProteinID:KRG99574	ProteinID:KRG99574.1	PFAM:PF00173	PRINTS:PR00363	ScanProsite:PS00191
PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF69	SMART:SM01117	SUPFAM:SSF55856	TMHMM:TMhelix
UniParc:UPI00023DAAB3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:32201114..32203551

Molecular Weight (calculated)

15109.0 Da

IEP (calculated)

5.985

GRAVY (calculated)

-0.249

Length

135 amino acids

Sequence
(BLAST)

001: MGGERNKVFT LAEVSQHNNA KDCWLVIHGK VYNVTKFLED HPGGDEVLLS STGKDATNDF EDIGHSTSAV AMMDEFYVGD IDTSTIPSKV KYTPPKQPHY
101: NQDKTPEFII RILQFLVPLF ILGLAVGIRF YTKST

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.