CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04210
KRH24687
KRH28186
KRH57502
KRH77301

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46650.1	KRH04210	AT5G47120.1	19054355
AT2G46650.1	KRH24687	AT5G47120.1	19054355
AT2G46650.1	KRH28186	AT5G47120.1	19054355
AT2G46650.1	KRH57502	AT5G47120.1	19054355
AT2G46650.1	KRH77301	AT5G47120.1	19054355

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47845	Soybean	endoplasmic reticulum	92.47	95.07
KRH68944	Soybean	cytosol	67.12	69.5
KRG97223	Soybean	endoplasmic reticulum	65.75	68.09
KRH64355	Soybean	endoplasmic reticulum	54.11	56.43
Solyc06g053170.2.1	Tomato	cytosol, plastid	14.38	53.85
TraesCS6A01G240700.1	Wheat	cytosol, golgi, mitochondrion	47.95	49.65
KRG99574	Soybean	cytosol, endoplasmic reticulum	45.89	49.63
KRH66053	Soybean	endoplasmic reticulum	45.21	48.89
TraesCS6B01G284000.1	Wheat	cytosol	47.26	48.59
TraesCS6D01G222900.1	Wheat	cytosol	47.26	48.59
KRG99780	Soybean	cytosol	45.21	47.83
Zm00001d017425_P001	Maize	cytosol	44.52	46.76
CDY61721	Canola	cytosol	42.47	46.27
CDY27310	Canola	cytosol	42.47	46.27
Bra039268.1-P	Field mustard	cytosol	42.47	46.27
KRH46744	Soybean	endoplasmic reticulum	44.52	45.77
Os02t0649800-01	Rice	plasma membrane	41.78	44.2
AT2G46650.1	Thale cress	cytosol	39.73	43.94
Bra004518.1-P	Field mustard	cytosol	39.73	43.28
CDY41545	Canola	cytosol	39.73	43.28
CDX80035	Canola	cytosol	39.04	42.54
KRH53553	Soybean	cytosol	34.25	41.32
KRH53581	Soybean	endoplasmic reticulum	54.79	41.03
HORVU6Hr1G061420.4	Barley	cytosol	45.21	40.49
KRH52065	Soybean	cytosol	33.56	35.77
KRH61382	Soybean	cytosol	33.56	35.25
OQU85747	Sorghum	mitochondrion	45.89	31.31
KRH74256	Soybean	endoplasmic reticulum, golgi	22.6	27.73
KRH07276	Soybean	endoplasmic reticulum, plasma membrane	21.23	20.26

Protein Annotations

EntrezGene:100305546	MapMan:21.9.1.7.1.3	Gene3D:3.10.120.10	EMBL:ACUP02009831	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf
InterPro:Cyt_B5_heme-BS	EnsemblPlantsGene:GLYMA_16G021300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0020037	GO:GO:0046872	UniProt:I1MKF6	InterPro:IPR001199	InterPro:IPR036400
EnsemblPlants:KRH06410	ProteinID:KRH06410	ProteinID:KRH06410.1	ProteinID:KRH06411.1	ProteinID:KRH06412.1	PFAM:PF00173
PRINTS:PR00363	ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR19359	PANTHER:PTHR19359:SF43	SMART:SM01117
SUPFAM:SSF55856	TMHMM:TMhelix	UniParc:UPI00023D7831	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:2007977..2013058

Molecular Weight (calculated)

16303.1 Da

IEP (calculated)

5.191

GRAVY (calculated)

-0.492

Length

146 amino acids

Sequence
(BLAST)

001: MGSKTKTFTF EEVAKHNHRK DCWIIVKGKV YDVTPFLDDH PGGDEVLVTA TEKDATTDFE DIGHSDSATQ MMEKYFVGEV DTNTLPAQVT SNNSVRQPTQ
101: APPAYNNQSS GFVVKMLQYI VPLLILAFAF GLQYYGKKNK STESEN

Best Arabidopsis Sequence Match ( AT2G32720.1 )
(BLAST)

001: MGDEAKIFTL SEVSEHNQAH DCWIVINGKV YNVTKFLEDH PGGDDVLLSS TGKDATDDFE DVGHSESARE MMEQYYVGEI DPTTIPKKVK YTPPKQPHYN
101: QDKTSEFIIK LLQFLVPLAI LGLAVGIRIY TKSG

Arabidopsis Description

CYTB5-BCYTB5-D [Source:UniProtKB/TrEMBL;Acc:A0A178VXM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.