Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- golgi 3
- peroxisome 1
- plasma membrane 2
- mitochondrion 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010452.1-P | |
| Bra013908.1-P | |
| Bra013910.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20150.1 | Bra010452.1-P | AT4G25660.1 | 21798944 |
| AT4G20150.1 | Bra013908.1-P | AT4G25660.1 | 21798944 |
| AT4G20150.1 | Bra013910.1-P | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012516.1-P | Field mustard | mitochondrion | 73.08 | 93.83 |
| CDY31451 | Canola | mitochondrion | 72.12 | 92.59 |
| CDY54560 | Canola | mitochondrion | 72.12 | 92.59 |
| AT4G20150.1 | Thale cress | extracellular, mitochondrion | 71.15 | 91.36 |
| Os07t0498300-01 | Rice | mitochondrion | 60.58 | 77.78 |
| GSMUA_Achr8P03530_001 | Banana | extracellular | 59.62 | 76.54 |
| Solyc10g005230.2.1 | Tomato | extracellular, mitochondrion | 59.62 | 76.54 |
| VIT_01s0010g00360.t01 | Wine grape | extracellular | 34.62 | 70.59 |
| TraesCS2A01G230200.1 | Wheat | extracellular, mitochondrion | 57.69 | 68.18 |
| TraesCS2B01G251800.1 | Wheat | extracellular, mitochondrion | 57.69 | 68.18 |
| TraesCS2D01G233900.1 | Wheat | extracellular | 57.69 | 68.18 |
| KRH42439 | Soybean | mitochondrion, plastid | 58.65 | 67.03 |
| Zm00001d021536_P003 | Maize | extracellular | 62.5 | 65.0 |
| OQU89974 | Sorghum | extracellular, peroxisome | 62.5 | 64.36 |
| Zm00001d006421_P002 | Maize | extracellular, mitochondrion | 58.65 | 62.89 |
| HORVU2Hr1G049640.1 | Barley | extracellular, mitochondrion | 53.85 | 60.87 |
| HORVU2Hr1G051150.4 | Barley | extracellular, mitochondrion | 53.85 | 60.87 |
| KRH58545 | Soybean | extracellular, mitochondrion | 59.62 | 57.41 |
| PGSC0003DMT400029312 | Potato | mitochondrion | 58.65 | 53.98 |
| VIT_01s0010g03830.t01 | Wine grape | mitochondrion | 52.88 | 43.65 |
Protein Annotations
| EnsemblPlants:Bra020934.1 | EnsemblPlants:Bra020934.1-P | EnsemblPlantsGene:Bra020934 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR36052 | TMHMM:TMhelix | UniParc:UPI0002545848 | UniProt:M4DWP0 | MapMan:35.2 |
Description
AT4G20150 (E=1e-038) | unknown protein
Coordinates
chrA08:-:11113975..11114372
Molecular Weight (calculated)
11406.3 Da
IEP (calculated)
9.239
GRAVY (calculated)
0.423
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLSATMVGA LLGLGTQMYS NALRKLPYMR HPWEHVVGMG LGAVFANQLV KWDVKLKEDL DVMLDKARAA NERRYFGMSL CLCGFLLVSS IVFGNGSISI
101: ITGL
101: ITGL
1: MPISATMVGA LLGLGTQMYS NALRKLPYMR HPWEHVVGMG LGAVFANQLV KWDVKLKEDL DVMLAKARAA NERRYFDEDR D
Arabidopsis Description
Excitatory amino acid transporter [Source:UniProtKB/TrEMBL;Acc:Q94AL6]
SUBAcon: [mitochondrion,extracellular]
SUBAcon: [mitochondrion,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.