Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- mitochondrion 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d045580_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20150.1 | Zm00001d045580_P001 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU89974 | Sorghum | extracellular, peroxisome | 96.0 | 95.05 |
| Os07t0498300-01 | Rice | mitochondrion | 69.0 | 85.19 |
| TraesCS2D01G233900.1 | Wheat | extracellular | 71.0 | 80.68 |
| TraesCS2B01G251800.1 | Wheat | extracellular, mitochondrion | 71.0 | 80.68 |
| TraesCS2A01G230200.1 | Wheat | extracellular, mitochondrion | 71.0 | 80.68 |
| GSMUA_Achr8P03530_001 | Banana | extracellular | 63.0 | 77.78 |
| Zm00001d006421_P002 | Maize | extracellular, mitochondrion | 75.0 | 77.32 |
| HORVU2Hr1G049640.1 | Barley | extracellular, mitochondrion | 70.0 | 76.09 |
| HORVU2Hr1G051150.4 | Barley | extracellular, mitochondrion | 70.0 | 76.09 |
| CDX78977 | Canola | extracellular, mitochondrion | 61.0 | 74.39 |
| Bra012516.1-P | Field mustard | mitochondrion | 60.0 | 74.07 |
| AT4G20150.1 | Thale cress | extracellular, mitochondrion | 60.0 | 74.07 |
| CDY54560 | Canola | mitochondrion | 59.0 | 72.84 |
| CDY31451 | Canola | mitochondrion | 59.0 | 72.84 |
| CDX98657 | Canola | extracellular, mitochondrion | 62.0 | 72.09 |
| CDY01636 | Canola | mitochondrion | 58.0 | 71.6 |
| Solyc10g005230.2.1 | Tomato | extracellular, mitochondrion | 56.0 | 69.14 |
| VIT_01s0010g00360.t01 | Wine grape | extracellular | 33.0 | 64.71 |
| KRH42439 | Soybean | mitochondrion, plastid | 57.0 | 62.64 |
| Bra020934.1-P | Field mustard | extracellular, golgi, vacuole | 65.0 | 62.5 |
| KRH58545 | Soybean | extracellular, mitochondrion | 57.0 | 52.78 |
| PGSC0003DMT400029312 | Potato | mitochondrion | 57.0 | 50.44 |
| VIT_01s0010g03830.t01 | Wine grape | mitochondrion | 49.0 | 38.89 |
Protein Annotations
| EMBL:BT034386 | EnsemblPlants:Zm00001d021536_P003 | EnsemblPlants:Zm00001d021536_T003 | EnsemblPlantsGene:Zm00001d021536 | EntrezGene:100192083 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR36052 | ProteinID:ONM57416.1 | ProteinID:ONM57417.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00017B68EA | UniProt:B4FB98 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr7:-:155283655..155287662
Molecular Weight (calculated)
11171.0 Da
IEP (calculated)
9.239
GRAVY (calculated)
0.126
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MPATPTIIGA LLGLGTQMYS NALRKLPYMR HPWEHLLGMG LGAVFVNQLV KFDEKLKEDL DKMLERARLA NEQRYIGTVL TCPGMLCLQI HFAIVAGSSR
1: MPISATMVGA LLGLGTQMYS NALRKLPYMR HPWEHVVGMG LGAVFANQLV KWDVKLKEDL DVMLAKARAA NERRYFDEDR D
Arabidopsis Description
Excitatory amino acid transporter [Source:UniProtKB/TrEMBL;Acc:Q94AL6]
SUBAcon: [mitochondrion,extracellular]
SUBAcon: [mitochondrion,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.