Skip to main content
crop-pal logo
Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
plastid: 18453340
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 29575040 doi
WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 18453340 doi
W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
BAC19900 Rice mitochondrion, plastid 99.47 99.47
BAV58150 Barley plasma membrane 98.95 98.95
BAV58160 Barley cytosol 98.95 98.95
HORVU3Hr1G115130.1 Barley cytosol 98.95 98.95
HORVU2Hr1G086590.1 Barley cytosol 98.95 98.95
TraesCSU01G270500.1 Wheat cytosol 98.42 98.42
TraesCS6D01G150700.1 Wheat golgi, plastid, unclear 98.42 98.42
TraesCS4A01G070100.1 Wheat cytosol 98.42 98.42
TraesCS4A01G241800.1 Wheat cytosol 97.89 97.89
TraesCSU01G249400.1 Wheat cytosol 97.89 97.89
TraesCSU01G225300.1 Wheat cytosol 97.89 97.89
TraesCS7D01G300700.1 Wheat cytosol 97.89 97.89
TraesCS7B01G458400.1 Wheat cytosol 97.89 97.89
TraesCS7B01G457900.1 Wheat cytosol 97.89 97.89
TraesCS1B01G458700.1 Wheat cytosol 97.37 97.37
TraesCS6D01G201100.1 Wheat cytosol 97.37 97.37
TraesCS2B01G146500.1 Wheat cytosol 97.37 97.37
HORVU1Hr1G037960.1 Barley cytosol 97.37 97.37
TraesCS7A01G098700.1 Wheat cytosol 96.84 97.35
TraesCS1D01G193000.1 Wheat cytosol 96.84 96.84
TraesCS7B01G487500.1 Wheat cytosol 96.84 96.84
TraesCS2B01G282700.1 Wheat cytosol 96.84 96.84
TraesCS6B01G216400.1 Wheat cytosol 96.84 96.84
TraesCS4A01G145000.1 Wheat cytosol 96.32 96.32
TraesCS4D01G137500.1 Wheat cytosol 96.32 96.32
TraesCS6D01G317000.1 Wheat cytosol 95.26 95.26
HORVU1Hr1G025100.1 Barley cytosol, mitochondrion 98.95 93.53
TraesCS3B01G564800.1 Wheat cytosol 93.16 93.16
ATMG00070.1 Thale cress cytosol 92.11 92.11
GSMUA_AchrUn_... Banana plastid 86.84 86.84
Os12t0422971-00 Rice mitochondrion 48.95 81.58
CDY45537 Canola mitochondrion 93.16 79.02
CDY17574 Canola cytosol 15.26 78.38
Solyc01g020470.1.1 Tomato cytosol 44.74 77.27
PGSC0003DMT400053837 Potato cytosol 27.37 72.22
Solyc03g061560.1.1 Tomato cytosol, endoplasmic reticulum, nucleus, plastid, unclear 53.16 68.24
Solyc08g029250.1.1 Tomato cytosol, mitochondrion 41.58 66.95
HORVU7Hr1G074160.1 Barley cytosol, mitochondrion 19.47 64.91
Solyc08g065620.1.1 Tomato mitochondrion, plasma membrane, plastid 47.89 55.83
Protein Annotations
MapMan:2.4.1.2.2Gene3D:3.30.460.80EntrezGene:4055894ProteinID:AAR91073.1GO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0008137
GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0016651GO:GO:0055114EnsemblPlantsGene:GRMZM5G839924
EnsemblPlants:GRMZM5G839924_P01EnsemblPlants:GRMZM5G839924_T01InterPro:IPR037232InterPro:NADH_UbQ_OxRdtase_30kDa_suInterPro:NADH_quin_OxRdtase_su_C/D-likePFAM:PD001581
PFAM:PF00329PANTHER:PTHR10884PANTHER:PTHR10884:SF10UniProt:Q6R9L0SUPFAM:SSF143243UniParc:UPI0000233EFB
Description
NADH dehydrogenase subunit 9 [Source:UniProtKB/TrEMBL;Acc:Q6R9L0]
Coordinates
chrMt:+:101544..102116
Molecular Weight (calculated)
22595.5 Da
IEP (calculated)
8.641
GRAVY (calculated)
-0.779
Length
190 amino acids
Sequence
(BLAST)
001: MDNQSIFKYS WEILPKKWVH KMKRSEHGNR SYTNTDYPFP LLCFLKWHTY TRVQVSIDIC GVDHPSRKRR FEVVHNLLST RYNSRIRVQT SADEVTRISP
101: VVSPFPSAGR WEREVWDMSG VSSINHPDLR RISTDYGFEG HPLRKDFPLS GYVEVRYDDP EKRVVSEPIE MTQEFRYFDF ASPWEQRSDG
Best Arabidopsis Sequence Match ( ATMG00070.1 )
(BLAST)
001: MDNQFIFKYS WETLPKKWVK KMERSEHGNR SDTNTDYLFQ LLCFLKLHTY TRVQVSIDIC GVDHPSRKRR FEVVYNLLST RYNSRIRVQT SADEVTRISP
101: VVSLFPSAGR WEREVWDMFG VSFINHPDLR RISTDYGFEG HPLRKDLPLS GYVQVRYDDP EKRVVSEPIE MTQEFRYFDF ASPWEQRSDG
Arabidopsis Description
NAD9NADH dehydrogenase subunit 9 [Source:TAIR;Acc:ATMG00070]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.