CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
BAV58160	Barley	cytosol	100.0	100.0
HORVU3Hr1G115130.1	Barley	cytosol	100.0	100.0
HORVU2Hr1G086590.1	Barley	cytosol	100.0	100.0
BAC19900	Rice	mitochondrion, plastid	99.47	99.47
TraesCS6D01G150700.1	Wheat	golgi, plastid, unclear	99.47	99.47
TraesCS4A01G070100.1	Wheat	cytosol	99.47	99.47
TraesCSU01G225300.1	Wheat	cytosol	98.95	98.95
TraesCS7B01G458400.1	Wheat	cytosol	98.95	98.95
TraesCS7B01G457900.1	Wheat	cytosol	98.95	98.95
GRMZM5G839924_P01	Maize	plastid	98.95	98.95
HORVU1Hr1G037960.1	Barley	cytosol	98.42	98.42
TraesCS6B01G216400.1	Wheat	cytosol	97.89	97.89
HORVU1Hr1G025100.1	Barley	cytosol, mitochondrion	100.0	94.53
ATMG00070.1	Thale cress	cytosol	92.11	92.11
GSMUA_AchrUn_...	Banana	plastid	87.89	87.89
Os12t0422971-00	Rice	mitochondrion	48.42	80.7
CDY45537	Canola	mitochondrion	93.16	79.02
CDY17574	Canola	cytosol	15.26	78.38
Solyc01g020470.1.1	Tomato	cytosol	44.74	77.27
PGSC0003DMT400053837	Potato	cytosol	27.37	72.22
Solyc03g061560.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid, unclear	53.16	68.24
Solyc08g029250.1.1	Tomato	cytosol, mitochondrion	42.11	67.8
HORVU7Hr1G074160.1	Barley	cytosol, mitochondrion	20.0	66.67
Solyc08g065620.1.1	Tomato	mitochondrion, plasma membrane, plastid	48.42	56.44

Protein Annotations

MapMan:2.4.1.2.2	Gene3D:3.30.460.80	ProteinID:ANI86443.1	ENA:AP017301.1:CDS:complement(339139..339711)	EnsemblPlants:BAV58150	ProteinID:BAV58150
ProteinID:BAV58150.1	ProteinID:BAV58160.1	EnsemblPlantsGene:EPlHVUG00000039893	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008137	GO:GO:0008150
GO:GO:0008152	GO:GO:0055114	InterPro:IPR037232	GO:M0Z344	UniProt:M0Z344	InterPro:NADH_UbQ_OxRdtase_30kDa_su
InterPro:NADH_quin_OxRdtase_su_C/D-like	PFAM:PD001581	PFAM:PF00329	PANTHER:PTHR10884	PANTHER:PTHR10884:SF10	SUPFAM:SSF143243
UniParc:UPI0002052E5B	:	:	:	:	:

Description

nad9_2NADH dehydrogenase subunit 9

Coordinates

chrMt:-:339139..339711

Molecular Weight (calculated)

22611.6 Da

IEP (calculated)

8.225

GRAVY (calculated)

-0.748

Length

190 amino acids

Sequence
(BLAST)

001: MDNQSIFQYS WEILPKKWVH KMKRSEHGNR SYTNTDYPFP LLCFLKWHTY TRVQVSIDIC GVDHPSRKRR FEVVHNLLST RYNSRIRVQT SADEVTRISP
101: VVSLFPSAGR WEREVWDMSG VSSINHPDLR RISTDYGFEG HPLRKDFPLS GYVEVRYDDP EKRVVSEPIE MTQEFRYFDF ASPWEQRSDG

Best Arabidopsis Sequence Match ( ATMG00070.1 )
(BLAST)

001: MDNQFIFKYS WETLPKKWVK KMERSEHGNR SDTNTDYLFQ LLCFLKLHTY TRVQVSIDIC GVDHPSRKRR FEVVYNLLST RYNSRIRVQT SADEVTRISP
101: VVSLFPSAGR WEREVWDMFG VSFINHPDLR RISTDYGFEG HPLRKDLPLS GYVQVRYDDP EKRVVSEPIE MTQEFRYFDF ASPWEQRSDG

Arabidopsis Description

NAD9NADH dehydrogenase subunit 9 [Source:TAIR;Acc:ATMG00070]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.