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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, unclear, plastid, cytosol, nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, nucleus, plastid, unclear
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY17574 Canola cytosol 19.59 78.38
Solyc01g020470.1.1 Tomato cytosol 48.65 65.45
Solyc08g065620.1.1 Tomato mitochondrion, plasma membrane, plastid 61.49 55.83
TraesCS7A01G098700.1 Wheat cytosol 68.24 53.44
BAV58150 Barley plasma membrane 68.24 53.16
TraesCSU01G249400.1 Wheat cytosol 68.24 53.16
TraesCSU01G225300.1 Wheat cytosol 68.24 53.16
TraesCS7B01G458400.1 Wheat cytosol 68.24 53.16
TraesCS6D01G201100.1 Wheat cytosol 68.24 53.16
TraesCS6B01G216400.1 Wheat cytosol 68.24 53.16
TraesCS4A01G070100.1 Wheat cytosol 68.24 53.16
TraesCS2B01G146500.1 Wheat cytosol 68.24 53.16
TraesCS1B01G458700.1 Wheat cytosol 68.24 53.16
BAV58160 Barley cytosol 68.24 53.16
GRMZM5G839924_P01 Maize plastid 68.24 53.16
HORVU3Hr1G115130.1 Barley cytosol 68.24 53.16
HORVU2Hr1G086590.1 Barley cytosol 68.24 53.16
HORVU1Hr1G037960.1 Barley cytosol 67.57 52.63
TraesCSU01G270500.1 Wheat cytosol 67.57 52.63
BAC19900 Rice mitochondrion, plastid 67.57 52.63
TraesCS7B01G457900.1 Wheat cytosol 67.57 52.63
TraesCS6D01G150700.1 Wheat golgi, plastid, unclear 67.57 52.63
TraesCS4D01G137500.1 Wheat cytosol 67.57 52.63
TraesCS4A01G241800.1 Wheat cytosol 66.89 52.11
TraesCS4A01G145000.1 Wheat cytosol 66.89 52.11
TraesCS3B01G564800.1 Wheat cytosol 66.89 52.11
TraesCS2B01G282700.1 Wheat cytosol 66.89 52.11
TraesCS7D01G300700.1 Wheat cytosol 66.89 52.11
TraesCS1D01G193000.1 Wheat cytosol 66.22 51.58
TraesCS6D01G317000.1 Wheat cytosol 65.54 51.05
TraesCS7B01G487500.1 Wheat cytosol 65.54 51.05
Solyc08g029250.1.1 Tomato cytosol, mitochondrion 40.54 50.85
HORVU1Hr1G025100.1 Barley cytosol, mitochondrion 68.24 50.25
GSMUA_AchrUn_... Banana plastid 62.84 48.95
HORVU7Hr1G074160.1 Barley cytosol, mitochondrion 16.22 42.11
Os12t0422971-00 Rice mitochondrion 32.43 42.11
Solyc08g065550.1.1 Tomato unclear 4.73 8.75
Protein Annotations
Gene3D:3.30.460.80MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005747GO:GO:0006091GO:GO:0008137
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0045333GO:GO:0055114
InterPro:IPR037232UniProt:K4BH04InterPro:NADH_UbQ_OxRdtase_30kDa_suInterPro:NADH_quin_OxRdtase_su_C/D-likePFAM:PD001581PFAM:PF00329
PANTHER:PTHR10884PANTHER:PTHR10884:SF10SUPFAM:SSF143243EnsemblPlantsGene:Solyc03g061560.1EnsemblPlants:Solyc03g061560.1.1UniParc:UPI00027690BA
Description
No Description!
Coordinates
chr3:-:30370983..30371429
Molecular Weight (calculated)
17752.3 Da
IEP (calculated)
10.167
GRAVY (calculated)
-0.408
Length
148 amino acids
Sequence
(BLAST)
001: MDNQFIFKYS WETLPKKWVK KMEISEHENR YDTNTNYLFQ LLCFMKLHTY TRVQVSIDIC GVDYPSRKQR FEVVYNLLSI RYNSRIRVQT SADKVIRIFL
101: VVNLFPSAGR WEREVWDVFG VSHQSSGSTP YINRLWFRGS SIMKRTSS
Best Arabidopsis Sequence Match ( ATMG00070.1 )
(BLAST)
001: MDNQFIFKYS WETLPKKWVK KMERSEHGNR SDTNTDYLFQ LLCFLKLHTY TRVQVSIDIC GVDHPSRKRR FEVVYNLLST RYNSRIRVQT SADEVTRISP
101: VVSLFPSAGR WEREVWDMFG VSFINHPDLR RISTDYGFEG HPLRKDLPLS GYVQVRYDDP EKRVVSEPIE MTQEFRYFDF ASPWEQRSDG
Arabidopsis Description
NAD9NADH dehydrogenase subunit 9 [Source:TAIR;Acc:ATMG00070]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.