Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- cytosol 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
|
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048854 | Potato | mitochondrion | 68.75 | 46.22 |
| CDY17564 | Canola | cytosol | 81.25 | 39.16 |
| Solyc08g029250.1.1 | Tomato | cytosol, mitochondrion | 31.25 | 21.19 |
| Solyc01g020470.1.1 | Tomato | cytosol | 21.25 | 15.45 |
| Solyc03g061560.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus, plastid, unclear | 8.75 | 4.73 |
| Solyc08g065620.1.1 | Tomato | mitochondrion, plasma membrane, plastid | 3.75 | 1.84 |
Protein Annotations
| MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0006091 | GO:GO:0008137 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0045333 | GO:GO:0055114 | InterPro:IPR037232 |
| UniProt:K4CLD5 | InterPro:NADH_UbQ_OxRdtase_30kDa_su | InterPro:NADH_quin_OxRdtase_su_C/D-like | PFAM:PF00329 | PANTHER:PTHR10884 | PANTHER:PTHR10884:SF10 |
| SUPFAM:SSF143243 | EnsemblPlantsGene:Solyc08g065550.1 | EnsemblPlants:Solyc08g065550.1.1 | UniParc:UPI000276B6D1 | : | : |
Description
No Description!
Coordinates
chr8:+:53685464..53685706
Molecular Weight (calculated)
9737.3 Da
IEP (calculated)
5.102
GRAVY (calculated)
-0.961
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MRTQTSFYTH PDLRRISTDY GFEGHPLRKD LPLSGYVEVR YDDPEKRVVS EPIEMTQEFR YFDFASPWEQ RSDRCWVAWN
001: MDNQFIFKYS WETLPKKWVK KMERSEHGNR SDTNTDYLFQ LLCFLKLHTY TRVQVSIDIC GVDHPSRKRR FEVVYNLLST RYNSRIRVQT SADEVTRISP
101: VVSLFPSAGR WEREVWDMFG VSFINHPDLR RISTDYGFEG HPLRKDLPLS GYVQVRYDDP EKRVVSEPIE MTQEFRYFDF ASPWEQRSDG
101: VVSLFPSAGR WEREVWDMFG VSFINHPDLR RISTDYGFEG HPLRKDLPLS GYVQVRYDDP EKRVVSEPIE MTQEFRYFDF ASPWEQRSDG
Arabidopsis Description
NAD9NADH dehydrogenase subunit 9 [Source:TAIR;Acc:ATMG00070]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.