Factsheet for VIT_04s0008g03010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05380_001	Banana	cytosol	61.76	82.96
KRH05378	Soybean	nucleus	78.49	78.49
KRH15638	Soybean	nucleus	78.12	78.27
Solyc05g056250.2.1	Tomato	plastid	78.12	78.12
CDX73541	Canola	cytosol	29.04	75.6
TraesCS5D01G165200.1	Wheat	cytosol, golgi	68.2	68.2
HORVU5Hr1G050160.1	Barley	cytosol	68.2	68.2
TraesCS5A01G160100.2	Wheat	cytosol	68.2	67.95
Os02t0686400-01	Rice	extracellular	68.38	67.76
TraesCS5B01G157800.1	Wheat	cytosol	67.83	67.34
KXG31524	Sorghum	cytosol	67.65	67.28
AT4G31180.1	Thale cress	cytosol	68.93	67.2
Zm00001d008975_P002	Maize	cytosol	67.28	67.16
Zm00001d015168_P001	Maize	extracellular, plasma membrane	66.54	66.3
CDY28248	Canola	cytosol	65.99	65.39
CDX68726	Canola	extracellular	65.99	65.39
Bra011251.1-P	Field mustard	cytosol	65.81	65.21
AT4G26870.1	Thale cress	cytosol	63.6	65.04
Bra007014.1-P	Field mustard	cytosol	20.96	64.77
CDX78190	Canola	cytosol	20.96	64.77
OQU84347	Sorghum	cytosol	58.64	64.19
CDY35247	Canola	cytosol	62.13	63.89
CDY13418	Canola	cytosol	64.52	63.59
Bra024018.1-P	Field mustard	cytosol	64.52	63.59
CDX72297	Canola	cytosol	63.79	62.64
CDY14727	Canola	cytosol	61.58	62.38
HORVU7Hr1G107410.1	Barley	cytosol	61.76	62.34
Os02t0139600-01	Rice	cytosol	40.26	62.04
TraesCS5D01G333800.2	Wheat	cytosol	60.11	58.81
TraesCS5B01G327800.1	Wheat	cytosol, plastid	59.01	58.36
TraesCS5A01G327900.1	Wheat	cytosol	59.19	58.23
TraesCS7B01G222700.1	Wheat	cytosol	32.9	57.01
HORVU5Hr1G083090.1	Barley	cytosol, plastid	57.35	56.93
GSMUA_Achr10P...	Banana	cytosol	15.26	56.85
CDY06845	Canola	nucleus	48.16	51.68
HORVU6Hr1G022660.15	Barley	cytosol	37.87	51.5
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	37.13	51.01
HORVU4Hr1G090760.1	Barley	cytosol	36.4	49.13
TraesCS1A01G111100.1	Wheat	cytosol	43.38	44.44
HORVU1Hr1G024420.4	Barley	mitochondrion	33.46	41.74
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	7.17	26.9
VIT_00s0229g00020.t01	Wine grape	plastid	23.35	21.75
VIT_11s0016g02680.t01	Wine grape	cytosol	22.43	21.37
Bra011081.1-P	Field mustard	cytosol	58.46	17.97
VIT_06s0004g07580.t01	Wine grape	cytosol	6.8	17.37
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	7.72	17.36
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	7.72	17.36
VIT_12s0034g00320.t01	Wine grape	cytosol	9.19	16.67
VIT_16s0013g00080.t01	Wine grape	cytosol	16.73	14.68
VIT_00s2558g00010.t01	Wine grape	cytosol	7.17	14.44
VIT_00s0120g00100.t01	Wine grape	cytosol	11.76	13.79

Protein Annotations

EntrezGene:100262746	wikigene:100262746	MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	InterPro:Asp-tRNA_synthase_2
InterPro:Asp/Asn-tRNA-synth_IIb	ProteinID:CCB46675	ProteinID:CCB46675.1	ncoils:Coil	UniProt:F6H2W4	EMBL:FN595231
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004815	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006422	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	EntrezGene:LOC100262746	wikigene:LOC100262746	HAMAP:MF_02075
InterPro:NA-bd_OB-fold	PFAM:PF00152	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR43450	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGR:TC53562	TIGR:TC64086	TIGRFAMs:TIGR00458	UniParc:UPI00015C845D	ArrayExpress:VIT_04s0008g03010
EnsemblPlantsGene:VIT_04s0008g03010	EnsemblPlants:VIT_04s0008g03010.t01	unigene:Vvi.11447	RefSeq:XP_002283440	RefSeq:XP_002283440.1	InterPro:aa-tRNA-synt_II
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:2495262..2500350

Molecular Weight (calculated)

60864.1 Da

IEP (calculated)

6.371

GRAVY (calculated)

-0.258

Length

544 amino acids

Sequence
(BLAST)

001: MSSESQTPNL SVEDEAKAQS KKAAKKEAAK LEKQRRRQEA ASSAASASVA GISIGDTPDP LASNYGDVPL LDLQSKEVTG LKWTDIGALT EDLKDQKVLI
101: RGRAQTIRAV GKNIAFLVVR QMGFTVQCVL TVAPDLVSRH MVKYATGLSR ESHVDIEGII SVPGVPIKGA TQQVEVQVRK LYGISKAENL PINIEDAARS
201: ESEIEKALQA GEQLVRVNQD TRLNYRVLDL RTPANQAIFR VQCQVENIFR QFLLSEGFVG IHTPKLIGGS SEGGSAVFRL DYKGQPACLA QSPQLHKQMA
301: ICGDFGRVFE IGPVFRAEDS FTHRHLCEFT GLDVEMEIKE HYFEVMDIVD RLFVAMFDSL NENCKKELEA IERQYPFEPL KYLRKTLRLP FQEGVQMLKE
401: VGMEVDPYGD LNTEAERKLG QLVLEKYGTE FYILHRYPLA VRPFYTMPSY DDPLYSNSFD VFIRGEEIIS GAQRVHVPDF LEKRAEACGI DVKTISTYID
501: SFRYGAPPHG GFGVGLERVV MLFCALNNIR KTSLFPRDPT RIAP

Best Arabidopsis Sequence Match ( AT4G31180.2 )
(BLAST)

001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP

Arabidopsis Description

IBI1Aspartate--tRNA ligase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M084]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.