CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15638	Soybean	nucleus	96.69	96.87
GSMUA_Achr3P05380_001	Banana	cytosol	59.38	79.75
VIT_04s0008g03010.t01	Wine grape	cytosol	78.49	78.49
Solyc05g056250.2.1	Tomato	plastid	75.74	75.74
CDX73541	Canola	cytosol	28.31	73.68
Os02t0686400-01	Rice	extracellular	69.85	69.22
TraesCS5D01G165200.1	Wheat	cytosol, golgi	68.2	68.2
HORVU5Hr1G050160.1	Barley	cytosol	68.01	68.01
TraesCS5A01G160100.2	Wheat	cytosol	68.2	67.95
AT4G31180.1	Thale cress	cytosol	69.67	67.92
TraesCS5B01G157800.1	Wheat	cytosol	68.2	67.7
Zm00001d015168_P001	Maize	extracellular, plasma membrane	67.83	67.58
KXG31524	Sorghum	cytosol	67.83	67.46
Zm00001d008975_P002	Maize	cytosol	67.46	67.34
CDX68726	Canola	extracellular	66.91	66.3
CDY28248	Canola	cytosol	66.73	66.12
Bra011251.1-P	Field mustard	cytosol	66.73	66.12
AT4G26870.1	Thale cress	cytosol	64.15	65.6
Bra007014.1-P	Field mustard	cytosol	21.14	65.34
CDX78190	Canola	cytosol	21.14	65.34
Bra024018.1-P	Field mustard	cytosol	65.99	65.04
CDY13418	Canola	cytosol	65.99	65.04
CDX72297	Canola	cytosol	65.62	64.44
CDY35247	Canola	cytosol	62.13	63.89
HORVU7Hr1G107410.1	Barley	cytosol	62.32	62.89
OQU84347	Sorghum	cytosol	57.35	62.78
CDY14727	Canola	cytosol	61.21	62.01
Os02t0139600-01	Rice	cytosol	39.52	60.91
TraesCS5D01G333800.2	Wheat	cytosol	61.76	60.43
HORVU5Hr1G083090.1	Barley	cytosol, plastid	59.74	59.31
TraesCS5B01G327800.1	Wheat	cytosol, plastid	59.93	59.27
TraesCS5A01G327900.1	Wheat	cytosol	60.11	59.13
TraesCS7B01G222700.1	Wheat	cytosol	34.01	58.92
HORVU6Hr1G022660.15	Barley	cytosol	38.79	52.75
GSMUA_Achr10P...	Banana	cytosol	13.97	52.05
CDY06845	Canola	nucleus	48.16	51.68
HORVU7Hr1G011750.7	Barley	cytosol, mitochondrion, nucleus	36.58	50.25
HORVU4Hr1G090760.1	Barley	cytosol	36.03	48.64
TraesCS1A01G111100.1	Wheat	cytosol	43.01	44.07
HORVU1Hr1G024420.4	Barley	mitochondrion	32.72	40.83
KRH04132	Soybean	plastid	22.61	22.36
KRH57405	Soybean	plastid	22.43	22.14
KRH60164	Soybean	endoplasmic reticulum	22.43	21.52
KRH41453	Soybean	cytosol, extracellular, nucleus	22.06	21.16
Bra011081.1-P	Field mustard	cytosol	58.46	17.97
KRH38090	Soybean	cytosol	6.8	14.98
KRH66191	Soybean	plastid	17.28	14.71
KRH07367	Soybean	cytosol	16.73	14.58

Protein Annotations

EntrezGene:100811577	MapMan:17.2.4	Gene3D:2.40.50.140	Gene3D:3.30.930.10	EMBL:ACUP02010733	InterPro:Asp-tRNA_synthase_2
InterPro:Asp/Asn-tRNA-synth_IIb	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G223600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004812	GO:GO:0004815	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006422	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:I1MX58	InterPro:IPR006195	EnsemblPlants:KRH05378	ProteinID:KRH05378	ProteinID:KRH05378.1	HAMAP:MF_02075
InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862
PANTHER:PTHR43450	PANTHER:PTHR43450:SF1	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00458	UniParc:UPI000233E239
InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:37669023..37673105

Molecular Weight (calculated)

60257.3 Da

IEP (calculated)

6.338

GRAVY (calculated)

-0.197

Length

544 amino acids

Sequence
(BLAST)

001: MSSSESQDPA AAAASSEAQV SKKAAKKEAA KLEKLRRRQE IAAASAATAN LSVDEEDPLG GNYGDVPLVE LQSKTPSDVG EWTRVEALGG ALENNSVLIR
101: GRAQAIRPVG KKMAFLVIRE NGFTVQCLVQ AQPDTVSAQM VKFAAALSRE SIVDVEGVVS VPTAPIKGAT QQVEIQVRKL YCVSRAVPTL PINLEDAARS
201: EVEIEKALQA GEQLVRVNQD TRLNFRVLDV RTPANQGIFR IQSQVGNAFR QFLVSQGFCE IHTPKLIAGS SEGGAAVFRL DYKGQPACLA QSPQLHKQMS
301: ICGDFGRVFE IGPVFRAEDS YTHRHLCEFT GLDVEMEIKK HYFEVMDLVD RLFVAMFDSL NQNCKKDLEA VGSQYPFEPL KYLRKTLRLT YEEGIQMLKD
401: VGVEIEPYGD LNTEAERKLG QLVLEKYGTE FYILHRYPLA IRPFYTMPCY DNPAYSNSFD VFIRGEEIIS GAQRVHVPEF LEQRAAACGI DVKTISSYID
501: SFRYGAPPHG GFGVGLERVV MLFCGLNNIR KTSLFPRDPL RIAP

Best Arabidopsis Sequence Match ( AT4G31180.2 )
(BLAST)

001: MSSESEIPPL SSSTAAAEES GEKTSKKAAK KEAAKLEKLR RRQEQEEATR RTASISLEEN DEFSNNYGDV TLTELQSSAD PKAGKWIEAV EGKEWTDVSD
101: LVEEMLESEV LIRGRVHTNR PTSNKLGFVV LRESGSTVQC VVSQSEKTKV GANMVKYLKQ LSRESFVDVI GVVTLPKEPL TGTTQQVEIQ VRKVYCINKS
201: LAKLPLSVED AARSEADIEA SLQTPSPAAR VNQDTRLNYR VLDLRTPANQ AIFQLQYEVE YAFREKLRFK NFVGIHTPKL MAGSSEGGSA VFRLEYKGQP
301: ACLAQSPQLH KQMAICGDLR RVFEVGPVFR AEDSFTHRHL CEFVGLDVEM EIRKHYSEIM DLVDELFVFI FTSLNERCKK ELQAVGKQYP FEPLKFLPKT
401: LRLTFEEGVQ MLKEAGVEVD PLGDLNTESE RKLGQLVLEK YNTEFYILHR YPKAVRPFYT MTCADNPLYS NSFDVFIRGE EIISGAQRVH IPEVLEQRAG
501: ECGIDVKTIS TYIDSFRYGA PLHGGFGVGL ERVVMLFCAL NNIRKTSLFP RDPQRLSP

Arabidopsis Description

IBI1Aspartate--tRNA ligase 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M084]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.