Factsheet for VIT_00s0120g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g00320.t01	Wine grape	cytosol	35.99	55.67
VIT_11s0016g02680.t01	Wine grape	cytosol	62.5	50.79
VIT_16s0013g00080.t01	Wine grape	cytosol	65.52	49.03
CDX88584	Canola	cytosol	49.14	43.1
Os01t0372700-01	Rice	plastid	51.08	42.4
PGSC0003DMT400060831	Potato	cytosol, extracellular	51.72	41.38
VIT_06s0004g07580.t01	Wine grape	cytosol	18.97	41.31
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	51.51	41.21
Bra006861.1-P	Field mustard	cytosol	49.14	41.08
KRH60164	Soybean	endoplasmic reticulum	49.35	40.39
HORVU1Hr1G021130.2	Barley	plastid	48.92	40.11
KRH41453	Soybean	cytosol, extracellular, nucleus	48.92	40.04
EER90985	Sorghum	cytosol	48.28	39.93
EER95098	Sorghum	cytosol	48.06	39.75
CDY11908	Canola	plastid	49.14	39.65
TraesCS1A01G102600.1	Wheat	golgi	48.28	39.58
TraesCS1B01G113400.1	Wheat	cytosol	48.28	39.58
Zm00001d009271_P003	Maize	cytosol	47.63	39.32
TraesCS1D01G094600.1	Wheat	cytosol	47.84	39.22
AT1G70980.1	Thale cress	cytosol	48.06	39.05
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	20.26	38.84
CDY32766	Canola	cytosol	48.06	38.78
Bra002799.1-P	Field mustard	cytosol	48.06	38.78
KRH38090	Soybean	cytosol	20.47	38.46
AT5G56680.1	Thale cress	cytosol	47.2	38.29
CDY32876	Canola	cytosol, extracellular	47.41	38.26
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	19.83	38.02
CDY53991	Canola	cytosol	43.53	37.55
CDY42212	Canola	cytosol	45.91	37.5
TraesCS2A01G584300.1	Wheat	cytosol	42.03	35.07
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	27.16	32.56
TraesCS7D01G028100.1	Wheat	cytosol	34.91	31.95
VIT_00s2558g00010.t01	Wine grape	cytosol	18.53	31.85
Bra002754.1-P	Field mustard	cytosol	40.52	31.49
TraesCS7A01G031700.1	Wheat	cytosol	34.7	31.45
CDY38272	Canola	cytosol	30.39	29.62
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	27.37	25.45
VIT_00s0229g00020.t01	Wine grape	plastid	29.74	23.63
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	6.9	22.07
VIT_04s0008g03010.t01	Wine grape	cytosol	13.79	11.76
AT1G68420.1	Thale cress	cytosol	0.65	3.45

Protein Annotations

MapMan:17.2.3	Gene3D:3.30.930.10	ProteinID:CCB62716	ProteinID:CCB62716.1	ncoils:Coil	UniProt:F6I6Z8
EMBL:FN596761	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	PFAM:PF00152	PFscan:PS51185
PANTHER:PTHR22594	PANTHER:PTHR22594:SF34	SUPFAM:SSF55681	UniParc:UPI000210A532	ArrayExpress:VIT_00s0120g00100	EnsemblPlantsGene:VIT_00s0120g00100
EnsemblPlants:VIT_00s0120g00100.t01	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:334646..337025

Molecular Weight (calculated)

52136.9 Da

IEP (calculated)

7.287

GRAVY (calculated)

-0.223

Length

464 amino acids

Sequence
(BLAST)

001: MQDVEEDKRK WAEELNLCHL REVFLYKANP ISHFSYLPKL TPTQLFSPLS PSHSPCIPFY SFLDACQGKG LLASLELNDG SYPANLQVIV DAALVPLGQL
101: VQISTCVHVE SSLKVPPEGT KQRVEFRVEK VHHVGPVDPA KYPLPKTRLT LKFLRVFVHF RSRTNMIPAV ARICNALAYA THTFFQNHGF LHAHTPIITT
201: SDCEGAGEMF RVTTLISDAE KVKKELIKNP SPSEVDIEAD KALVKEKGEA VAQPKSVKAS KGEITAFVAE LNKAKENLSR LEERSKLKPG IPQKDGKIDY
301: SQDFFVRQAF LTAIKLLDEV VKKDKKFENK VEWGIDLASE HERFSTEELF KKLVIVHDYL KGIKAFYMML NDDMKTAAAD KPLRQEVNIH YNSNSGNDSG
401: NNSTEESSSP TDFDLHESLE PILLIQASLV KALHGHLWAI VPFPISPSLI LKNILLNPFL QIIF

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.