Factsheet for Bra002754.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	57.62	68.94
Bra002799.1-P	Field mustard	cytosol	63.48	65.91
Bra006861.1-P	Field mustard	cytosol	61.14	65.77
AT1G70980.1	Thale cress	cytosol	59.13	61.82
AT5G56680.1	Thale cress	cytosol	58.79	61.36
KRH60164	Soybean	endoplasmic reticulum	55.44	58.38
VIT_11s0016g02680.t01	Wine grape	cytosol	55.78	58.32
KRH41453	Soybean	cytosol, extracellular, nucleus	54.44	57.32
Os01t0372700-01	Rice	plastid	50.92	54.38
TraesCS1A01G102600.1	Wheat	golgi	50.92	53.71
EER95098	Sorghum	cytosol	50.42	53.65
HORVU1Hr1G021130.2	Barley	plastid	50.75	53.53
EER90985	Sorghum	cytosol	50.25	53.48
TraesCS1D01G094600.1	Wheat	cytosol	50.59	53.36
TraesCS1B01G113400.1	Wheat	cytosol	50.59	53.36
Zm00001d009271_P003	Maize	cytosol	49.92	53.02
PGSC0003DMT400060831	Potato	cytosol, extracellular	51.42	52.93
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	51.09	52.59
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	33.67	51.94
VIT_12s0034g00320.t01	Wine grape	cytosol	25.29	50.33
TraesCS2A01G584300.1	Wheat	cytosol	45.56	48.92
TraesCS7D01G028100.1	Wheat	cytosol	40.2	47.34
TraesCS7A01G031700.1	Wheat	cytosol	40.54	47.27
VIT_06s0004g07580.t01	Wine grape	cytosol	16.42	46.01
KRH38090	Soybean	cytosol	17.92	43.32
AT1G68420.1	Thale cress	cytosol	6.03	41.38
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	16.75	41.32
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	16.75	41.32
VIT_00s0120g00100.t01	Wine grape	cytosol	31.49	40.52
VIT_16s0013g00080.t01	Wine grape	cytosol	39.03	37.58
Bra021059.1-P	Field mustard	plastid	34.67	36.83
Bra026243.1-P	Field mustard	plastid	34.0	36.06
Bra001250.1-P	Field mustard	cytosol	31.16	29.86
Bra029647.1-P	Field mustard	cytosol	30.82	29.02
Bra007014.1-P	Field mustard	cytosol	5.86	19.89
Bra024018.1-P	Field mustard	cytosol	17.25	18.66
Bra011251.1-P	Field mustard	cytosol	17.09	18.58
Bra011081.1-P	Field mustard	cytosol	15.58	5.25

Protein Annotations

MapMan:17.2.3	Gene3D:2.40.50.140	EnsemblPlantsGene:Bra002754	EnsemblPlants:Bra002754.1	EnsemblPlants:Bra002754.1-P	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	UniProt:M4CEX2	InterPro:NA-bd_OB-fold
InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36
SUPFAM:SSF50249	SUPFAM:SSF55681	UniParc:UPI0002544DC9	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	SEG:seg

Description

AT1G70980 (E=3e-096) SYNC3 | SYNC3; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding

Coordinates

chrA10:+:7847563..7850310

Molecular Weight (calculated)

66298.7 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.071

Length

597 amino acids

Sequence
(BLAST)

001: MTHEMTDQQT AVSLANDGGN EAELTDQKVL SHWWIRTEEQ GKETFSIIVA NDGSSSSANL QVMLAATIDN GCLKIPLQEV SSPKEGAFSS PTVEKSSFSD
101: HVLVKSILCR SDSGSGLTGQ KVRIFGWVRT RRLQGKGSFT FLEVNDGSCP AYLQVIVDAS LSDDLSKVIA KGTCVVVDEC LKLPPQGTKQ KIELKVEEVV
201: SVGTVDQVTY PFPKNKPSPE HLRKYLHLCA RTNLIASVAS IRNAFAFATY SFFQSQSFLY VNTPIITTSD CEGAGEMFQV TMLISAAEKL ERELIENPPP
301: TEADVEAARV VVKERGVAVA QLKSAKANEQ EITASLAELT DAKLSLAMIE ERSRLKPGFY LKKMEKLIIL KTFWVGKLSC LFLVSYSLRA TLVLLATALV
401: EPELALADLE EDMDCAEAYV RYMCTWLLDN CYDDLEVMAK NVDDGCIDRL KLVASTPFVR VTYTDTIELL KEAVAQGETF GNQVEWGIDL ASDHERYLTE
501: VVFQKPVIVY NYPKGIKAFY MRLNDDGKTV AAMDVLVPKE MGLPVEPYEW YLDLRRHGTV KHSGFGLGFE RMVLFATGMD NIRDVIPFPR YPGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.