Factsheet for AT5G56680.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G70980.1	Thale cress	cytosol	84.09	84.24
Bra006861.1-P	Field mustard	cytosol	80.07	82.52
CDX88584	Canola	cytosol	75.87	82.04
CDY11908	Canola	plastid	81.82	81.39
CDY32876	Canola	cytosol, extracellular	81.12	80.7
Bra002799.1-P	Field mustard	cytosol	80.94	80.52
CDY32766	Canola	cytosol	80.94	80.52
VIT_11s0016g02680.t01	Wine grape	cytosol	75.7	75.83
CDY42212	Canola	cytosol	73.95	74.47
CDY53991	Canola	cytosol	69.93	74.35
KRH60164	Soybean	endoplasmic reticulum	73.6	74.25
KRH41453	Soybean	cytosol, extracellular, nucleus	73.25	73.9
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	48.95	72.35
VIT_06s0004g07580.t01	Wine grape	cytosol	26.22	70.42
TraesCS1A01G102600.1	Wheat	golgi	69.06	69.79
TraesCS1D01G094600.1	Wheat	cytosol	68.71	69.43
TraesCS1B01G113400.1	Wheat	cytosol	68.71	69.43
PGSC0003DMT400060831	Potato	cytosol, extracellular	70.28	69.31
HORVU1Hr1G021130.2	Barley	plastid	68.53	69.26
Os01t0372700-01	Rice	plastid	67.66	69.23
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	69.76	68.79
VIT_12s0034g00320.t01	Wine grape	cytosol	36.01	68.67
EER95098	Sorghum	cytosol	66.43	67.74
EER90985	Sorghum	cytosol	66.08	67.38
Zm00001d009271_P003	Maize	cytosol	65.73	66.9
AT1G68420.1	Thale cress	cytosol	9.79	64.37
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	26.92	63.64
TraesCS7D01G028100.1	Wheat	cytosol	56.29	63.51
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	26.75	63.22
TraesCS7A01G031700.1	Wheat	cytosol	56.29	62.89
TraesCS2A01G584300.1	Wheat	cytosol	59.79	61.51
Bra002754.1-P	Field mustard	cytosol	61.36	58.79
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	48.43	55.51
KRH38090	Soybean	cytosol	22.2	51.42
CDY38272	Canola	cytosol	41.96	50.42
VIT_16s0013g00080.t01	Wine grape	cytosol	52.8	48.71
VIT_00s0120g00100.t01	Wine grape	cytosol	38.29	47.2
AT4G17300.2	Thale cress	cytosol, plastid	45.98	44.8
AT3G07420.1	Thale cress	cytosol	42.48	38.09
AT4G26870.1	Thale cress	cytosol	20.8	22.37
AT4G31180.1	Thale cress	cytosol	21.33	21.86

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	EntrezGene:835769	ProteinID:AED96795.1
EMBL:AF170909	ArrayExpress:AT5G56680	EnsemblPlantsGene:AT5G56680	RefSeq:AT5G56680	TAIR:AT5G56680	RefSeq:AT5G56680-TAIR-G
EnsemblPlants:AT5G56680.1	TAIR:AT5G56680.1	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	Unigene:At.22552	ProteinID:BAB09886.1
EMBL:BT030358	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	GO:GO:0046686	InterPro:IPR000738	InterPro:IPR006195
HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	RefSeq:NP_200479.1	PFAM:PF00152	PFAM:PF00458
PFAM:PF01336	PO:PO:0000005	PO:PO:0000293	PO:PO:0009025	PO:PO:0020030	PRINTS:PR01042
PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	UniProt:Q9SW96	SMART:SM00991
SUPFAM:SSF50249	SUPFAM:SSF55681	Symbol:SYNC1	TIGRFAMs:TIGR00457	UniParc:UPI00001365CB	InterPro:WHEP-TRS_dom
InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:

Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]

Coordinates

chr5:+:22936534..22939060

Molecular Weight (calculated)

63786.4 Da

IEP (calculated)

5.242

GRAVY (calculated)

-0.190

Length

572 amino acids

Sequence
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.