CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42212	Canola	cytosol	100.0	94.72
CDY32766	Canola	cytosol	87.73	82.09
CDY32876	Canola	cytosol, extracellular	86.8	81.22
CDX88584	Canola	cytosol	77.51	78.83
CDY11908	Canola	plastid	83.64	78.26
AT5G56680.1	Thale cress	cytosol	74.35	69.93
AT1G70980.1	Thale cress	cytosol	74.16	69.88
VIT_11s0016g02680.t01	Wine grape	cytosol	71.75	67.6
KRH60164	Soybean	endoplasmic reticulum	70.63	67.02
KRH41453	Soybean	cytosol, extracellular, nucleus	69.89	66.31
VIT_12s0034g00320.t01	Wine grape	cytosol	36.25	65.0
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	60.22	64.93
VIT_06s0004g07580.t01	Wine grape	cytosol	25.65	64.79
Os01t0372700-01	Rice	plastid	66.36	63.86
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	45.72	63.57
HORVU1Hr1G021130.2	Barley	plastid	65.99	62.72
TraesCS1A01G102600.1	Wheat	golgi	65.43	62.19
AT1G68420.1	Thale cress	cytosol	10.04	62.07
TraesCS1B01G113400.1	Wheat	cytosol	65.24	62.01
TraesCS1D01G094600.1	Wheat	cytosol	65.06	61.84
PGSC0003DMT400060831	Potato	cytosol, extracellular	66.17	61.38
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	65.99	61.21
EER90985	Sorghum	cytosol	63.75	61.14
EER95098	Sorghum	cytosol	63.57	60.96
Zm00001d009271_P003	Maize	cytosol	62.83	60.14
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	26.77	59.5
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	26.58	59.09
TraesCS2A01G584300.1	Wheat	cytosol	57.25	55.4
TraesCS7A01G031700.1	Wheat	cytosol	52.04	54.69
TraesCS7D01G028100.1	Wheat	cytosol	51.49	54.64
CDY38272	Canola	cytosol	46.1	52.1
KRH38090	Soybean	cytosol	22.49	48.99
CDY08000	Canola	cytosol	13.57	47.1
VIT_16s0013g00080.t01	Wine grape	cytosol	52.04	45.16
CDY58174	Canola	plastid	46.28	44.31
CDY50134	Canola	plastid	46.28	44.31
CDY42978	Canola	plastid	45.91	43.87
VIT_00s0120g00100.t01	Wine grape	cytosol	37.55	43.53
CDY35583	Canola	plastid	44.61	42.86
CDY28051	Canola	cytosol	40.15	34.12
CDY07998	Canola	cytosol	38.85	33.93
CDY35930	Canola	cytosol	39.96	33.91
CDX74047	Canola	cytosol	38.85	33.55
CDX73541	Canola	cytosol	10.59	27.27
CDY35247	Canola	cytosol	21.38	21.74
CDY28248	Canola	cytosol	21.38	20.95
CDX68726	Canola	extracellular	21.38	20.95
CDY14727	Canola	cytosol	20.45	20.48
CDX72297	Canola	cytosol	21.0	20.4
CDY13418	Canola	cytosol	20.82	20.29
CDX78190	Canola	cytosol	6.32	19.32
CDY06845	Canola	nucleus	17.1	18.15

Protein Annotations

MapMan:17.2.3	Gene3D:2.40.50.140	GO:A0A078IVI5	UniProt:A0A078IVI5	EnsemblPlants:CDY53991	ProteinID:CDY53991
ProteinID:CDY53991.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00011868001	InterPro:IPR000738	InterPro:IPR006195
InterPro:NA-bd_OB-fold	PFAM:PF00152	PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44
SUPFAM:SSF50249	SUPFAM:SSF55681	UniParc:UPI0004EE5271	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

BnaA03g58160DBnaA03g58160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVI5]

Coordinates

chrLK033261:-:23991..26277

Molecular Weight (calculated)

59543.0 Da

IEP (calculated)

4.864

GRAVY (calculated)

-0.228

Length

538 amino acids

Sequence
(BLAST)

001: MGGDIPPPVD QLAAVSLTSD EASSSTVQKA RFSDRVRIQS ILGRPDGGAG LAGQKVRISG WVKTGREQGK GAFAFLEVND GSCPANLQVM LPPEGKGTKQ
101: KIELSVVEVV DVGTVDPGTY PIPKTKLTLE RLREFLHLRA RTNSISAIAR IRHALAIATH TFFDEEGFLY VQTPIITTSD CEGAGEMFQV TTLISTTEKL
201: ERELIENPPP TEADVEAARV VVKERGEAVA ELKSAKASEQ DITASLAELA NAKLSLSRTV ERSRLKPGLR TKDGEVDYSP DFFGRQAFLS LESYACALGS
301: VYTFGPTFRA ENSHTSRHLA EFWIVEPELA LADLKEDMDC AEAYVRYMCT WLLDNCYDDL EVMAKNVDDG CIDRLKLVAS TPFVRVTYTD AIELLKEAVA
401: QGETFENQVE WGIDLASEHE RYLTEVVFQK PVIVYNYPKG IKAFYMRVND DGKTVAAMDV LVPKNSLVGA KEKNGMNRLE EIGLPVEPYE WYLDLRRHGT
501: VKHSGFGLGL ERMVLFATGM DNIRDVIPFP RYPGRADL

Best Arabidopsis Sequence Match ( AT1G70980.1 )
(BLAST)

001: MGDEIVPPAN QLAADNLEND GSTVQKAQFS DRVLIRSILG GGAKLAGQKV RIGGWVKTGR QQGKGTFAFL EVNDGSCPAN LQVMVDSSLY DLSRLVATGT
101: CVTVDGVLKI PPEGKGLKQS IELSVETVIA VGTVDPTTYP LPKTKLTPEF LRDVLHLRSR TNLISAVARI RNALAFATHS FFQEHSFLYI HTPIITTSDC
201: EGAGEMFQVT TLINHTERVE QDLIDNPPPT EADVEAARLI VKERGEAVAQ LKVAKASKEE ITASVAQLSV AKASLAHVEE RLRLKPGLPK NDGKIDYSND
301: FFGRQAFLTV SGQLQVETYA CALSSVYTFG PTFRAENSHT SRHLAEFWMV EPEIAFADIH DDMNCAEAYV KYMCKWLMDK CGDDMELMDK NVDEGCTKRL
401: NMVAKASFKR VTYTEAIERL EKAVAQGKVV FDNKVEWGID LASEHERYLT EVEFDQKPII VYNYPKGIKA FYMRLNDDEK TVAAMDVLVP KVGELIGGSQ
501: REERYDVIKQ RIEEMGLPME PYEWYLDLRR YGTVKHCGFG LGFERMIQFA TGIDNIRDVI PFPRYPGKAD L

Arabidopsis Description

SYNC3Asparagine--tRNA ligase, cytoplasmic 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.