CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89844
CDY18205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07420.1	CDX89844	AT1G04100.1	21798944
AT3G07420.1	CDY18205	AT1G04100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001250.1-P	Field mustard	cytosol	97.59	97.59
CDY07998	Canola	cytosol	95.35	96.43
CDY08000	Canola	cytosol	21.83	87.74
CDY28051	Canola	cytosol	82.5	81.2
CDY35930	Canola	cytosol	82.02	80.6
AT3G07420.1	Thale cress	cytosol	82.18	80.25
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	14.13	60.69
VIT_00s2558g00010.t01	Wine grape	cytosol	23.6	54.44
PGSC0003DMT400056710	Potato	cytosol	50.56	51.89
Solyc09g057950.2.1	Tomato	cytosol	49.44	50.57
KRH07367	Soybean	cytosol	50.08	50.0
KRH66191	Soybean	plastid	50.56	49.3
GSMUA_AchrUn_...	Banana	cytosol	41.73	46.1
GSMUA_Achr8P31970_001	Banana	mitochondrion	34.99	42.91
CDX88584	Canola	cytosol	34.67	40.83
CDY32766	Canola	cytosol	37.24	40.35
CDY32876	Canola	cytosol, extracellular	37.08	40.17
Os12t0414500-01	Rice	plasma membrane	39.49	40.0
CDY11908	Canola	plastid	36.12	39.13
CDY42212	Canola	cytosol	35.47	38.91
CDY53991	Canola	cytosol	33.55	38.85
CDY50134	Canola	plastid	31.62	35.05
CDY58174	Canola	plastid	31.62	35.05
CDY42978	Canola	plastid	31.14	34.46
CDY35583	Canola	plastid	30.66	34.11
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	26.16	32.67
CDY38272	Canola	cytosol	24.72	32.35
CDX73541	Canola	cytosol	7.38	22.01
CDX78190	Canola	cytosol	5.94	21.02
CDX68726	Canola	extracellular	17.01	19.31
CDY35247	Canola	cytosol	16.37	19.28
CDY28248	Canola	cytosol	16.85	19.13
CDX72297	Canola	cytosol	16.85	18.95
CDY13418	Canola	cytosol	16.69	18.84
CDY14727	Canola	cytosol	16.05	18.62
CDY06845	Canola	nucleus	11.88	14.6

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	GO:A0A078CB47	InterPro:Asn-tRNA-ligase	EnsemblPlants:CDX74047	ProteinID:CDX74047
ProteinID:CDX74047.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00111793001	PFAM:PF00152	PANTHER:PTHR22594
PANTHER:PTHR22594:SF36	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0004EEE9D1	InterPro:aa-tRNA-synt_II	SEG:seg

Description

BnaA03g30000D

Coordinates

chrLK031800:+:1071427..1074073

Molecular Weight (calculated)

69443.2 Da

IEP (calculated)

9.208

GRAVY (calculated)

-0.335

Length

623 amino acids

Sequence
(BLAST)

001: MDSHGKTHQR EHQDDVISPK PVALSKYSNR IELKTLLERS DGGARLAGKR VVIGGWVKSS RAVKKDSPAP PPPPQPSSVA VPPPPSTTKS NISCTEIIQS
101: KMNIFRKLFD VLSGGGKTTY PVFDKPEITG QKATSPPEYI IYFLISDGSS VSSLQVVVDS AMSTIPATQL MSLGTCIVAE GVLRHPLAAS AKHVIELEAE
201: KLLHVGTVDP EKYPLSKKQL PLHLLRDFSH FRPRTTTVGS VTRVHSALTL ASHTFFQSNG FQYVQVPVIT TTGVGEMFRV TTTLDREEKK HDGLSIETVK
301: AAIKEKSRLI DHLKRSDSNR EAVAAAVHDL KKTTDLAAQL EKKQKPKAAT QKLDFFGCDA YLIVSGRFHL ESYASALGKV YTYGPRFTAD KIDNARHLAE
401: TWNVEAEMAF SELDDAMDCA DDFFKFLCRY LLENRHEDMK FISKRVDKTV TTRLEATASN SLLRFSYTEA ISLLQTATTR TFETKPKWGV ALTEEHLSYL
501: TDEICKGSVM IIHSYPKEVK PFYVRLNDDK KTVAAFDLVV PKVGVVINGS QNEERFEILD ASIKELGSTS REKYEWYLDL RRHGTVKHSG ISLRMEHMLL
601: FATGLPDIKD AVPFPRSWGK ANN

Best Arabidopsis Sequence Match ( AT3G07420.1 )
(BLAST)

001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN

Arabidopsis Description

SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.