Factsheet for Bra001250.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015289.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07420.1	Bra015289.1-P	AT1G04100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74047	Canola	cytosol	97.59	97.59
AT3G07420.1	Thale cress	cytosol	81.54	79.62
Bra029647.1-P	Field mustard	cytosol	80.74	79.34
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	14.13	60.69
VIT_00s2558g00010.t01	Wine grape	cytosol	23.76	54.81
PGSC0003DMT400056710	Potato	cytosol	50.4	51.73
Solyc09g057950.2.1	Tomato	cytosol	49.28	50.41
KRH07367	Soybean	cytosol	50.4	50.32
KRH66191	Soybean	plastid	50.88	49.61
GSMUA_AchrUn_...	Banana	cytosol	41.57	45.92
GSMUA_Achr8P31970_001	Banana	mitochondrion	34.67	42.52
Bra006861.1-P	Field mustard	cytosol	36.44	40.9
Bra002799.1-P	Field mustard	cytosol	37.4	40.52
Os12t0414500-01	Rice	plasma membrane	39.49	40.0
Bra021059.1-P	Field mustard	plastid	31.94	35.41
Bra026243.1-P	Field mustard	plastid	31.14	34.46
Bra002754.1-P	Field mustard	cytosol	29.86	31.16
Bra007014.1-P	Field mustard	cytosol	6.1	21.59
Bra011251.1-P	Field mustard	cytosol	17.18	19.49
Bra024018.1-P	Field mustard	cytosol	17.01	19.2
Bra011081.1-P	Field mustard	cytosol	15.73	5.54

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	InterPro:Asn-tRNA-ligase	EnsemblPlantsGene:Bra001250	EnsemblPlants:Bra001250.1	EnsemblPlants:Bra001250.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	UniProt:M4CAM1	PFAM:PF00152	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36
SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI00025404C2	InterPro:aa-tRNA-synt_II	SEG:seg	:

Description

AT3G07420 (E=3e-156) NS2, ATNS2, SYNC2_ARATH, SYNC2 | NS2; asparagine-tRNA ligase

Coordinates

chrA03:-:15525344..15527924

Molecular Weight (calculated)

69515.1 Da

IEP (calculated)

9.080

GRAVY (calculated)

-0.386

Length

623 amino acids

Sequence
(BLAST)

001: MDSHRKTHQR EDEDDVISPK PVALSKYSNR IELKTLLERS DGGARLAGKR VVIGGGVKSS RAVKKDSPPP PPPSQPSSVA VPPPPSTTKS NISCTEIIQS
101: KMNIFRKLFD VLSGGGKTTY PIFDKPEITG QKATSPPEYT IYFLISDGSS VNSLQVVVDS AMSTIPTTQL MSLGTCIVAE GVLRHPLAAS AKHVIELEAE
201: KLLHVGTVDP EKYPLSKKQL PLHLLRDFSH FRPRTTTVGS VTRVHSALTL ASHTFFQSNG FQYVQVPVIT TTGVGEMFRV TTTLDREEKK HDGLSIETVK
301: AAIKEKSRLI DHLKRSDSNR EAVAAAVHDL KKTTDLAAQL EKKQKPKAAT QKLDFFGCDA YLTVSGRFHL ESYASALGKV YTYGPRFTAD KIDNARHLAE
401: TWNVEAEMAF SELDDAMDCA DDFFKFLCRY LLENRHEDMK FISKRVDKTV TTRLEATASN SLLRYSYTEA ISLLQKATTR TFETKPKWGV DLTEEHLSYL
501: TDEICKGSVM IIHSYPKEVK PFYVRLNDDK KTVAAFDLVV PKVGVVISGS QNEERFEILD ASIKELGSTS REKYEWYLDL RRHGTVKHSG ISLRMEHMLL
601: FATGLPDIKD AVPFPRSWGK ANN

Best Arabidopsis Sequence Match ( AT3G07420.1 )
(BLAST)

001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN

Arabidopsis Description

SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.