Factsheet for VIT_07s0141g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08000	Canola	cytosol	52.41	49.03
KRH66191	Soybean	plastid	68.97	15.65
KRH07367	Soybean	cytosol	66.9	15.54
Solyc09g057950.2.1	Tomato	cytosol	63.45	15.11
PGSC0003DMT400056710	Potato	cytosol	62.07	14.83
GSMUA_AchrUn_...	Banana	cytosol	56.55	14.54
Bra001250.1-P	Field mustard	cytosol	60.69	14.13
CDX74047	Canola	cytosol	60.69	14.13
CDY07998	Canola	cytosol	60.0	14.12
CDY28051	Canola	cytosol	61.38	14.06
CDY35930	Canola	cytosol	61.38	14.04
GSMUA_Achr8P31970_001	Banana	mitochondrion	48.28	13.78
Bra029647.1-P	Field mustard	cytosol	60.0	13.72
VIT_11s0016g02680.t01	Wine grape	cytosol	53.79	13.66
AT3G07420.1	Thale cress	cytosol	59.31	13.48
Os12t0414500-01	Rice	plasma membrane	53.79	12.68
VIT_00s0229g00020.t01	Wine grape	plastid	48.97	12.16
VIT_04s0008g03010.t01	Wine grape	cytosol	26.9	7.17
VIT_00s0120g00100.t01	Wine grape	cytosol	22.07	6.9
VIT_16s0013g00080.t01	Wine grape	cytosol	23.45	5.48
VIT_00s2558g00010.t01	Wine grape	cytosol	7.59	4.07
VIT_06s0004g07580.t01	Wine grape	cytosol	4.83	3.29
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	4.83	2.89
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	4.83	2.89
VIT_12s0034g00320.t01	Wine grape	cytosol	4.83	2.33

Protein Annotations

MapMan:17.2.3	Gene3D:3.30.930.10	ProteinID:CBI18747	ProteinID:CBI18747.3	UniProt:D7SSW3	EMBL:FN594991
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	PFAM:PF00152	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF55681
UniParc:UPI0001BE15A1	ArrayExpress:VIT_07s0141g00940	EnsemblPlantsGene:VIT_07s0141g00940	EnsemblPlants:VIT_07s0141g00940.t01	InterPro:aa-tRNA-synt_II	:

Description

No Description!

Coordinates

chr7_random:-:550771..551982

Molecular Weight (calculated)

16712.2 Da

IEP (calculated)

8.951

GRAVY (calculated)

-0.210

Length

145 amino acids

Sequence
(BLAST)

001: MREVLLHLNC YCYLPYAYNN GSYLVGEIYK RPVIIFNYPK KIKPFYMRVN DDGETVAAFD VVVPKAGTLI RGSQNEERMN MLSTRIKELG IRSEEYEWYM
101: DLRRHGTVKN SGFSVAFEHV VLFATGLVNV ADVIPFPRSY GKANN

Best Arabidopsis Sequence Match ( AT3G07420.1 )
(BLAST)

001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN

Arabidopsis Description

SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.