Factsheet for VIT_11s0016g02680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07580.t01	Wine grape	cytosol	33.8	90.61
VIT_12s0034g00320.t01	Wine grape	cytosol	47.11	89.67
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	34.85	82.23
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	34.68	81.82
KRH60164	Soybean	endoplasmic reticulum	78.11	78.66
KRH41453	Soybean	cytosol, extracellular, nucleus	77.41	77.95
CDX88584	Canola	cytosol	71.98	77.69
Bra006861.1-P	Field mustard	cytosol	75.48	77.66
PGSC0003DMT400060831	Potato	cytosol, extracellular	78.63	77.41
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	77.93	76.72
Os01t0372700-01	Rice	plastid	74.61	76.21
AT5G56680.1	Thale cress	cytosol	75.83	75.7
CDY11908	Canola	plastid	76.18	75.65
AT1G70980.1	Thale cress	cytosol	75.48	75.48
Bra002799.1-P	Field mustard	cytosol	76.01	75.48
CDY32766	Canola	cytosol	76.01	75.48
CDY32876	Canola	cytosol, extracellular	75.31	74.78
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	50.26	74.16
EER95098	Sorghum	cytosol	72.68	73.97
EER90985	Sorghum	cytosol	72.68	73.97
HORVU1Hr1G021130.2	Barley	plastid	73.2	73.85
TraesCS1A01G102600.1	Wheat	golgi	72.85	73.5
TraesCS1B01G113400.1	Wheat	cytosol	72.68	73.32
TraesCS1D01G094600.1	Wheat	cytosol	72.5	73.14
Zm00001d009271_P003	Maize	cytosol	71.98	73.13
CDY53991	Canola	cytosol	67.6	71.75
CDY42212	Canola	cytosol	71.1	71.48
TraesCS2A01G584300.1	Wheat	cytosol	63.22	64.93
TraesCS7D01G028100.1	Wheat	cytosol	57.09	64.3
TraesCS7A01G031700.1	Wheat	cytosol	57.44	64.06
VIT_16s0013g00080.t01	Wine grape	cytosol	68.3	62.9
VIT_00s0120g00100.t01	Wine grape	cytosol	50.79	62.5
AT1G68420.1	Thale cress	cytosol	9.28	60.92
KRH38090	Soybean	cytosol	24.17	55.87
Bra002754.1-P	Field mustard	cytosol	58.32	55.78
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	13.66	53.79
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	46.23	52.91
VIT_00s0229g00020.t01	Wine grape	plastid	49.74	48.63
CDY38272	Canola	cytosol	39.93	47.9
VIT_00s2558g00010.t01	Wine grape	cytosol	22.24	47.04
VIT_04s0008g03010.t01	Wine grape	cytosol	21.37	22.43

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	EntrezGene:100257593	wikigene:100257593	MapMan:17.2.3	Gene3D:2.40.50.140
InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	ProteinID:CCB51468	ProteinID:CCB51468.1	ncoils:Coil	UniProt:F6HGX0
EMBL:FN595756	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812
GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	InterPro:IPR006195
EntrezGene:LOC100257593	wikigene:LOC100257593	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152
PFAM:PF00458	PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594
PANTHER:PTHR22594:SF36	SMART:SM00991	SUPFAM:SSF50249	SUPFAM:SSF55681	TIGR:TC65669	TIGR:TC70101
TIGRFAMs:TIGR00457	UniParc:UPI000210879F	ArrayExpress:VIT_11s0016g02680	EnsemblPlantsGene:VIT_11s0016g02680	EnsemblPlants:VIT_11s0016g02680.t01	InterPro:WHEP-TRS_dom
RefSeq:XP_003633115	RefSeq:XP_003633115.1	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	:	:

Description

No Description!

Coordinates

chr11:-:2138418..2142287

Molecular Weight (calculated)

63997.0 Da

IEP (calculated)

6.407

GRAVY (calculated)

-0.247

Length

571 amino acids

Sequence
(BLAST)

001: MAEDSVPPVD QMALATLNDD VSTPFVKAQF SDRHLIRTIL SRPDGGAGLA GQTVKVGGWV KTGREQGKGS FAFLELNDGS CPANLQVIVD AAVAPLGQLV
101: QTGTCVHVEG LLKVPPEGTK QRVELRVEKV HHVGPVDPAK YPLPKTRLTL EFLRDFVHFR PRTNTISAVA RIRNALAYAT HTFFQNHGFL YIHTPIITTS
201: DCEGAGEMFQ VTTLISDAEK VEKELIKNPP PSEADIEAAK ALVKEKGEAV AQLKSAKASK GEITASVAEL NKAKENLSRL EERSKLKPGI PQKDGKIDYS
301: QDFFARQAFL TVSGQLQVET YACAVSSVYT FGPTFRAEHS HTSRHLAEFW MVEPEIAFAD LKDDMNCAEA YVKFLCQWLL DNCIDDMEFM AKNFDKGCID
401: RLRMVASTPF ERISYTEAIK LLEEAVKKDK KFENKVEWGI DLASEHERFL TEVLFKKPVI VHDYPKGIKA FYMRLNDDMK TVAAMDVLVP KVGELIGGSQ
501: REERYEVIEK RILEMGLPLE PYEWYLDLRR YGTVKHCGFG LGFERMILFA TGIDNIRDVI PFPRYPGRAD L

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.