Factsheet for PGSC0003DMT400060831

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	98.62	98.62
VIT_11s0016g02680.t01	Wine grape	cytosol	77.41	78.63
VIT_12s0034g00320.t01	Wine grape	cytosol	38.1	73.67
CDX88584	Canola	cytosol	66.9	73.35
KRH60164	Soybean	endoplasmic reticulum	71.55	73.19
Os01t0372700-01	Rice	plastid	70.17	72.81
VIT_06s0004g07580.t01	Wine grape	cytosol	26.72	72.77
KRH41453	Soybean	cytosol, extracellular, nucleus	70.52	72.13
Bra006861.1-P	Field mustard	cytosol	68.97	72.07
EER95098	Sorghum	cytosol	69.66	72.01
EER90985	Sorghum	cytosol	69.48	71.84
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	47.93	71.83
HORVU1Hr1G021130.2	Barley	plastid	69.83	71.55
TraesCS1A01G102600.1	Wheat	golgi	69.66	71.38
TraesCS1D01G094600.1	Wheat	cytosol	69.48	71.2
Zm00001d009271_P003	Maize	cytosol	68.97	71.17
TraesCS1B01G113400.1	Wheat	cytosol	69.31	71.02
AT1G70980.1	Thale cress	cytosol	69.66	70.75
CDY11908	Canola	plastid	69.83	70.43
AT5G56680.1	Thale cress	cytosol	69.31	70.28
CDY32766	Canola	cytosol	69.66	70.26
Bra002799.1-P	Field mustard	cytosol	69.66	70.26
CDY32876	Canola	cytosol, extracellular	69.31	69.91
CDY42212	Canola	cytosol	65.0	66.37
CDY53991	Canola	cytosol	61.38	66.17
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.59	66.12
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.41	65.7
TraesCS2A01G584300.1	Wheat	cytosol	60.86	63.49
TraesCS7D01G028100.1	Wheat	cytosol	54.14	61.93
TraesCS7A01G031700.1	Wheat	cytosol	53.79	60.94
AT1G68420.1	Thale cress	cytosol	8.62	57.47
KRH38090	Soybean	cytosol	22.24	52.23
VIT_00s0120g00100.t01	Wine grape	cytosol	41.38	51.72
Bra002754.1-P	Field mustard	cytosol	52.93	51.42
VIT_16s0013g00080.t01	Wine grape	cytosol	54.66	51.13
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	43.97	51.1
CDY38272	Canola	cytosol	37.93	46.22
PGSC0003DMT400039341	Potato	mitochondrion, plastid	44.66	45.36
PGSC0003DMT400056710	Potato	cytosol	40.69	38.88

Protein Annotations

KEGG:00970+6.1.1.22	EntrezGene:102603407	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812
GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	UniProt:M1C6I0
HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	EnsemblPlantsGene:PGSC0003DMG400023661
PGSC:PGSC0003DMG400023661	EnsemblPlants:PGSC0003DMT400060831	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36
SUPFAM:SSF50249	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI0002948DA3	RefSeq:XP_006351366.1	InterPro:aa-tRNA-synt_II
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

EMB2755 [Source:PGSC_GENE;Acc:PGSC0003DMG400023661]

Coordinates

chr10:+:57267621..57272148

Molecular Weight (calculated)

64687.6 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.246

Length

580 amino acids

Sequence
(BLAST)

001: MSVDSAPPVE KLTLSDAVEE AKFSQRVPIR SIVGRPDGGA GLAGNVVKIG GWVKTGREQG KGSFAFLEVN DGSCPGNLQV IVDASVHKLG DLVLTGTCVH
101: VEGELKVPPE GAKQKVELRV QKVISVGTVD AAKYPLPKTK LTLEFLRDVV HLRSRTNTIS AVARIRNALA YATHTFFQNN GFLYIHTPII TTSDCEGAGE
201: MFQVTSLISE AEKLEKELKE NPAPSESDIQ AAEQLAKEKG EVVAQLKASK ASMDKTDPNI ADINKKISAA VAELQRAKEN LLKLQERSKL GERYRLSAGI
301: PKKDGKIDYS EDFFGRQAFL TVSGQLQVET YACALSSVYT FGPTFRAEQS HTTRHLAEFW MVEPEIAFAD IQDDMNCAEA YVKFLCQWLL DHCLDDMEFM
401: TKFVDKDALS RLRMVASSNC HRITYTEAID ILEVAAKVKK FENKVEWGID LASEHERYLT EEHFKAPVIV FNYPKGIKAF YMKVNEDNKT VAAMDLLVPK
501: VGELIGGSQR EENYEVLRSR ILDMGLPLEP YEWYLDLRRY GTVKHSGFGL GFERMILFAT GIENIRDVIP FPRYPGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.