Factsheet for TraesCS2A01G584300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G102600.1	Wheat	golgi	75.36	74.03
Os01t0372700-01	Rice	plastid	73.56	73.17
EER90985	Sorghum	cytosol	72.48	71.84
EER95098	Sorghum	cytosol	72.3	71.66
Zm00001d009271_P003	Maize	cytosol	71.76	71.0
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	46.94	67.44
TraesCS7A01G031700.1	Wheat	cytosol	61.69	66.99
CDX88584	Canola	cytosol	60.61	63.71
Bra006861.1-P	Field mustard	cytosol	63.13	63.24
VIT_11s0016g02680.t01	Wine grape	cytosol	64.93	63.22
CDY11908	Canola	plastid	64.03	61.91
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	63.49	60.86
PGSC0003DMT400060831	Potato	cytosol, extracellular	63.49	60.86
CDY32766	Canola	cytosol	62.77	60.7
CDY32876	Canola	cytosol, extracellular	62.77	60.7
Bra002799.1-P	Field mustard	cytosol	62.77	60.7
VIT_12s0034g00320.t01	Wine grape	cytosol	32.73	60.67
VIT_06s0004g07580.t01	Wine grape	cytosol	23.02	60.09
AT5G56680.1	Thale cress	cytosol	61.51	59.79
KRH60164	Soybean	endoplasmic reticulum	60.61	59.44
AT1G70980.1	Thale cress	cytosol	60.97	59.37
KRH41453	Soybean	cytosol, extracellular, nucleus	60.25	59.08
AT1G68420.1	Thale cress	cytosol	9.17	58.62
CDY42212	Canola	cytosol	58.63	57.39
CDY53991	Canola	cytosol	55.4	57.25
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	24.46	56.2
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	24.28	55.79
TraesCS2A01G231500.2	Wheat	cytosol	39.57	51.89
Bra002754.1-P	Field mustard	cytosol	48.92	45.56
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	40.47	45.09
VIT_00s0120g00100.t01	Wine grape	cytosol	35.07	42.03
VIT_16s0013g00080.t01	Wine grape	cytosol	46.76	41.94
CDY38272	Canola	cytosol	34.35	40.13
KRH38090	Soybean	cytosol	17.81	40.08
TraesCS5A01G327900.1	Wheat	cytosol	21.04	21.16
TraesCS1A01G111100.1	Wheat	cytosol	19.78	20.72
TraesCS5A01G160100.2	Wheat	cytosol	19.96	20.33

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812
GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	InterPro:IPR006195
HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF01336	PRINTS:PR01042
PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SUPFAM:SSF50249	SUPFAM:SSF55681
TIGRFAMs:TIGR00457	EnsemblPlantsGene:TraesCS2A01G584300	EnsemblPlants:TraesCS2A01G584300.1	InterPro:WHEP-TRS_dom	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II
TIGR:cd00776	TIGR:cd04318	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:-:775668603..775689448

Molecular Weight (calculated)

61741.9 Da

IEP (calculated)

5.180

GRAVY (calculated)

-0.215

Length

556 amino acids

Sequence
(BLAST)

001: MAAGAPLEPE LEPPTTRIRI CAILEAGDAF AGQRVVVGGW VRAGREQGGG RFAFLDVNDG SCLGNLRVKV DAGTTAPRPL ARLTATGTSV LVEGELQADP
101: RAKHGVELSV ETLIEVGEVD AAAYPLPKTK PGHPLDPAYL RDFLHLRART NLIGAVLRIR SELSSATDAY FRDNGFQRVH TPIITTSDCE GAGEMFQVTT
201: LFSQAEKLDK ELKENPAASQ VDIDAAKIVV KEKGDIVAQL KSAQATKEKI AAAVSELKKA KESVSRMEER SRLTYGIPRS EDGSIAFVND FFKCPSYLTV
301: SGQLQLETLA CGLTDVYTFG PTFRAENSHT SRHLAEFWMV EAEMAFANLQ DDMNRAESYV QYLCKWLLEH CRAEMEFMVK HHDEAAIERL ELVSSTPLER
401: ISYTKAVEML EDADKIFENK VEWGIDLASE HERYLTEVVF KKPLIVFNYP KGIKAFYMRL NNDQKTVAAM DVLVPKVGEL IGGSQREERL DILEQRILDA
501: GLDLEQYAKY LDLRCFGSVK HSGFGLGLER MVLFATGLDN IRDVIPFPRY PGRADL

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.