CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90985	Sorghum	cytosol	98.4	98.4
Zm00001d009271_P003	Maize	cytosol	97.33	97.15
Os01t0372700-01	Rice	plastid	87.88	88.19
HORVU1Hr1G021130.2	Barley	plastid	83.78	83.04
TraesCS1A01G102600.1	Wheat	golgi	83.6	82.86
TraesCS1B01G113400.1	Wheat	cytosol	83.24	82.51
TraesCS1D01G094600.1	Wheat	cytosol	83.24	82.51
GSMUA_Achr6P19310_001	Banana	endoplasmic reticulum	52.58	76.23
VIT_11s0016g02680.t01	Wine grape	cytosol	73.97	72.68
TraesCS7D01G028100.1	Wheat	cytosol	65.42	72.39
TraesCS2A01G584300.1	Wheat	cytosol	71.66	72.3
TraesCS7A01G031700.1	Wheat	cytosol	64.35	70.51
PGSC0003DMT400060831	Potato	cytosol, extracellular	72.01	69.66
CDX88584	Canola	cytosol	65.6	69.57
Bra006861.1-P	Field mustard	cytosol	68.63	69.37
VIT_12s0034g00320.t01	Wine grape	cytosol	37.08	69.33
KRH41453	Soybean	cytosol, extracellular, nucleus	70.05	69.31
KRH60164	Soybean	endoplasmic reticulum	70.05	69.31
Solyc10g080710.1.1	Tomato	cytosol, nucleus, unclear	71.66	69.31
VIT_06s0004g07580.t01	Wine grape	cytosol	26.2	69.01
CDY11908	Canola	plastid	68.98	67.3
CDY32766	Canola	cytosol	68.45	66.78
Bra002799.1-P	Field mustard	cytosol	68.45	66.78
CDY32876	Canola	cytosol, extracellular	68.09	66.43
AT5G56680.1	Thale cress	cytosol	67.74	66.43
AT1G70980.1	Thale cress	cytosol	67.02	65.85
CDY53991	Canola	cytosol	60.96	63.57
CDY42212	Canola	cytosol	64.35	63.56
VIT_06s0004g07600.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.27	63.22
VIT_06s0080g00530.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	27.27	63.22
AT1G68420.1	Thale cress	cytosol	8.73	56.32
Bra002754.1-P	Field mustard	cytosol	53.65	50.42
CDY52736	Canola	endoplasmic reticulum, plastid, vacuole	43.32	48.7
KRH38090	Soybean	cytosol	21.39	48.58
VIT_16s0013g00080.t01	Wine grape	cytosol	53.3	48.23
KXG36232	Sorghum	mitochondrion	47.42	48.19
VIT_00s0120g00100.t01	Wine grape	cytosol	39.75	48.06
CDY38272	Canola	cytosol	36.72	43.28
OQU84347	Sorghum	cytosol	21.03	23.74
KXG31524	Sorghum	cytosol	19.96	20.48

Protein Annotations

KEGG:00970+6.1.1.22	Gene3D:1.10.287.10	MapMan:17.2.3	Gene3D:2.40.50.140	EntrezGene:8081503	InterPro:Asn-tRNA-ligase
InterPro:Asp/Asn-tRNA-synth_IIb	UniProt:C5WPG5	ncoils:Coil	ProteinID:EER92477.2	EnsemblPlants:EER95098	ProteinID:EER95098
ProteinID:EER95098.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004812
GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006421	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000738	InterPro:IPR006195
HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152	PFAM:PF00458	PFAM:PF01336
PRINTS:PR01042	PFscan:PS50862	PFscan:PS51185	PANTHER:PTHR22594	PANTHER:PTHR22594:SF36	SMART:SM00991
EnsemblPlantsGene:SORBI_3001G420400	SUPFAM:SSF50249	SUPFAM:SSF55681	unigene:Sbi.21114	TIGRFAMs:TIGR00457	UniParc:UPI0001A8312D
InterPro:WHEP-TRS_dom	RefSeq:XP_002468100.1	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:70137963..70145434

Molecular Weight (calculated)

62569.8 Da

IEP (calculated)

5.754

GRAVY (calculated)

-0.253

Length

561 amino acids

Sequence
(BLAST)

001: MAADAATAAM AAASLCDDLE PATARTRIRD VLAAGTARAG DRVVVGGWVR TGREQGKGSF AFLELSDGSC AATLQVIVDA AVHPLARLTA TGTSVLVEGE
101: IKEPPEGTKQ NVELKVSRVL EVGEVDAAVY PLPKGKVKLT LEKLRDVVHL RSRTNTIGAV ARIRHQLAYA SHTFFNENGF LYVHTPIITT SDCEGAGEMF
201: QVTTLFSQAE KTEKELRENP APSDSEIEAA KFLVKERGDV VAQLKAAKAS KQEISAAVDE LNRAKEIVSK LEERSKLKPG VPRKDDGSIA FENDFFKRQA
301: FLTVSGQLQV ETYACALSSV YTFGPTFRAE NSHTSRHLAE FWMVEPEIAF ANLQDDMNCA EKYVQYLCKW LLDHCQEDME FMVKNYDKSA IERLELVSST
401: PFVRISYTKA VELLKNVTDK KFDNKVEWGI DLASEHERYL TEDIFKKPVI VYNYPKGIKA FYMRLNDDDK TVAAMDVLVP KVGELIGGSQ REERLDVLKQ
501: RILDAGLPLE PYEWYLDLRR FGSVKHSGFG LGFERMILFA TGMENIRDVI PFPRYPGRAD L

Best Arabidopsis Sequence Match ( AT5G56680.1 )
(BLAST)

001: MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA
101: TGTCVTVDGV LKVPPKGKGT QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA THSFFQEHSF LYIHTPIITT
201: SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY
301: SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI
401: DRLKLVASTP FGRITYTKAI ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE KTVAAMDVLV PKVGELIGGS
501: QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

Arabidopsis Description

SYNC1Asparagine--tRNA ligase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.