Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07420.1 | CDX89844 | AT1G04100.1 | 21798944 |
| AT3G07420.1 | CDY18205 | AT1G04100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74047 | Canola | cytosol | 96.43 | 95.35 |
| CDY08000 | Canola | cytosol | 21.92 | 87.1 |
| CDY28051 | Canola | cytosol | 83.93 | 81.67 |
| CDY35930 | Canola | cytosol | 83.44 | 81.07 |
| AT3G07420.1 | Thale cress | cytosol | 83.6 | 80.72 |
| VIT_07s0141g00940.t01 | Wine grape | cytosol, extracellular, plastid | 14.12 | 60.0 |
| VIT_00s2558g00010.t01 | Wine grape | cytosol | 24.35 | 55.56 |
| PGSC0003DMT400056710 | Potato | cytosol | 50.81 | 51.57 |
| KRH07367 | Soybean | cytosol | 51.3 | 50.64 |
| Solyc09g057950.2.1 | Tomato | cytosol | 49.84 | 50.41 |
| KRH66191 | Soybean | plastid | 51.95 | 50.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.05 | 45.92 |
| GSMUA_Achr8P31970_001 | Banana | mitochondrion | 35.71 | 43.31 |
| CDX88584 | Canola | cytosol | 35.23 | 41.02 |
| Os12t0414500-01 | Rice | plasma membrane | 40.75 | 40.81 |
| CDY32766 | Canola | cytosol | 37.82 | 40.52 |
| CDY32876 | Canola | cytosol, extracellular | 37.66 | 40.35 |
| CDY11908 | Canola | plastid | 36.69 | 39.3 |
| CDY42212 | Canola | cytosol | 35.88 | 38.91 |
| CDY53991 | Canola | cytosol | 33.93 | 38.85 |
| CDY58174 | Canola | plastid | 32.31 | 35.41 |
| CDY50134 | Canola | plastid | 32.31 | 35.41 |
| CDY42978 | Canola | plastid | 31.82 | 34.81 |
| CDY35583 | Canola | plastid | 31.33 | 34.46 |
| CDY52736 | Canola | endoplasmic reticulum, plastid, vacuole | 26.62 | 32.87 |
| CDY38272 | Canola | cytosol | 24.68 | 31.93 |
| CDX73541 | Canola | cytosol | 7.31 | 21.53 |
| CDX78190 | Canola | cytosol | 5.84 | 20.45 |
| CDY35247 | Canola | cytosol | 16.56 | 19.28 |
| CDX68726 | Canola | extracellular | 16.88 | 18.94 |
| CDY28248 | Canola | cytosol | 16.72 | 18.76 |
| CDY14727 | Canola | cytosol | 16.23 | 18.62 |
| CDX72297 | Canola | cytosol | 16.56 | 18.41 |
| CDY13418 | Canola | cytosol | 16.4 | 18.3 |
| CDY06845 | Canola | nucleus | 11.85 | 14.4 |
Protein Annotations
| KEGG:00970+6.1.1.22 | MapMan:17.2.3 | GO:A0A078F8C5 | UniProt:A0A078F8C5 | InterPro:Asn-tRNA-ligase | EnsemblPlants:CDY07998 |
| ProteinID:CDY07998 | ProteinID:CDY07998.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004812 |
| GO:GO:0004816 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006418 | GO:GO:0006421 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00125228001 | PFAM:PF00152 |
| PANTHER:PTHR22594 | PANTHER:PTHR22594:SF36 | SUPFAM:SSF55681 | TIGRFAMs:TIGR00457 | UniParc:UPI0004EE6237 | InterPro:aa-tRNA-synt_II |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g35250DBnaC03g35250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8C5]
Coordinates
chrLK031982:+:493838..496350
Molecular Weight (calculated)
69051.8 Da
IEP (calculated)
9.325
GRAVY (calculated)
-0.361
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSHGKTHQR EHEDDVISPK PVALSKYSNR VELKTLLERS DGGARLAGKR VVIGGWVKSS RAVKKDSPPP PPPQPSVTVP PPASTKSNIS CTEIIQSKMN
101: IFRKLFDVLS GGGKTTYPIF DKPEITGQKA TSPPEYTIYF LISDGSSVSS LQVVVDSAMS TIPATQLMSL GTCIVAEGVL RHPLAASAKH VIELEAEKLL
201: HVGTVDPEKY PLSKKQLPLH LLRDFSHFRP RTTTVGSVTR VHSALTLASH TFFQSNGFQY VQVPVITTTG FGEMFRVTTT LDREEKKHDG LSIETVKAAI
301: KEKTRLIDHL KRSDSNREAV AAAVHDLKKT TDLAAQLEKK QKPQKLDFFG CDTYLTVSGR FHLESYASAL GKVYTFGPRF TADKIDNARH LAEMWNVEAE
401: IAFSELDDAM DCADDFFKFL CRYLLENRHE DMKFISKRVD KTVTTRLEAT ASNSLLRFSY TEAISLLQKA TTRTFETKPK WGVALKEEHL SYLTDEICKG
501: SVMIIHSYPK EVKPFYIRLN EDKKTVAAFD LVVPKVGVVI SGSQNEERFE ILDARIRELG STSREKYEWY LDLRRHGTVK HSGMSLRMEH MLLFATGLPD
601: IKDAVPFPRS WGKANN
101: IFRKLFDVLS GGGKTTYPIF DKPEITGQKA TSPPEYTIYF LISDGSSVSS LQVVVDSAMS TIPATQLMSL GTCIVAEGVL RHPLAASAKH VIELEAEKLL
201: HVGTVDPEKY PLSKKQLPLH LLRDFSHFRP RTTTVGSVTR VHSALTLASH TFFQSNGFQY VQVPVITTTG FGEMFRVTTT LDREEKKHDG LSIETVKAAI
301: KEKTRLIDHL KRSDSNREAV AAAVHDLKKT TDLAAQLEKK QKPQKLDFFG CDTYLTVSGR FHLESYASAL GKVYTFGPRF TADKIDNARH LAEMWNVEAE
401: IAFSELDDAM DCADDFFKFL CRYLLENRHE DMKFISKRVD KTVTTRLEAT ASNSLLRFSY TEAISLLQKA TTRTFETKPK WGVALKEEHL SYLTDEICKG
501: SVMIIHSYPK EVKPFYIRLN EDKKTVAAFD LVVPKVGVVI SGSQNEERFE ILDARIRELG STSREKYEWY LDLRRHGTVK HSGMSLRMEH MLLFATGLPD
601: IKDAVPFPRS WGKANN
001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
Arabidopsis Description
SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.