Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056710 | Potato | cytosol | 93.92 | 94.23 |
| VIT_07s0141g00940.t01 | Wine grape | cytosol, extracellular, plastid | 15.11 | 63.45 |
| VIT_00s2558g00010.t01 | Wine grape | cytosol | 26.44 | 59.63 |
| CDY08000 | Canola | cytosol | 14.61 | 57.42 |
| KRH07367 | Soybean | cytosol | 54.02 | 52.72 |
| KRH66191 | Soybean | plastid | 53.2 | 50.7 |
| CDY28051 | Canola | cytosol | 52.22 | 50.24 |
| CDY07998 | Canola | cytosol | 50.41 | 49.84 |
| Bra029647.1-P | Field mustard | cytosol | 51.56 | 49.53 |
| CDX74047 | Canola | cytosol | 50.57 | 49.44 |
| CDY35930 | Canola | cytosol | 51.4 | 49.37 |
| Bra001250.1-P | Field mustard | cytosol | 50.41 | 49.28 |
| AT3G07420.1 | Thale cress | cytosol | 51.07 | 48.75 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.69 | 46.1 |
| GSMUA_Achr8P31970_001 | Banana | mitochondrion | 35.96 | 43.11 |
| Os12t0414500-01 | Rice | plasma membrane | 41.71 | 41.3 |
| Solyc10g080710.1.1 | Tomato | cytosol, nucleus, unclear | 38.42 | 40.34 |
| Solyc03g019940.2.1 | Tomato | plastid | 30.38 | 32.4 |
| Solyc05g056250.2.1 | Tomato | plastid | 16.75 | 18.75 |
Protein Annotations
| KEGG:00970+6.1.1.22 | MapMan:17.2.3 | InterPro:Asn-tRNA-ligase | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004812 | GO:GO:0004816 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0006418 | GO:GO:0006421 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019538 | UniProt:K4CTI4 | PFAM:PF00152 | PANTHER:PTHR22594 |
| PANTHER:PTHR22594:SF36 | SUPFAM:SSF55681 | EnsemblPlantsGene:Solyc09g057950.2 | EnsemblPlants:Solyc09g057950.2.1 | TIGRFAMs:TIGR00457 | UniParc:UPI000276B55B |
| InterPro:aa-tRNA-synt_II | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:52553987..52556950
Molecular Weight (calculated)
68615.0 Da
IEP (calculated)
8.338
GRAVY (calculated)
-0.209
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSEQAPVIE CLKYSKRVML KTILRRSDGG VGLIGQRVVI GGWVKSSREI RLIQPVTPHS VPAQEVVSTK DVTCSEVLQS RIPLLRSIMK VFGAGEYRVR
101: EKINVVCQPQ PSVSILQVSD GSCVASLQVL VESALATPCQ VMATGTCLLI EGMLQQPSLQ GKHIIELHTE KILHLGLVDQ SNYPLSKKRL PLESLRDCSH
201: FRPRTTTVAS IMQIHNALTW ATHRFFQDQG FLHVQLPILT STDSEGFSEK FVVTTLLNKG KNYDQISSTE NAVVSVEAIR ASIKEKYKKV EELNRTNSNK
301: EALFAAQQDL KKTQELVSQL ETRQKANSGV TIETRKFDFT KDFFARQTHL TVSGRLHLES QACGLGNVYS FGPRFQAVKS ESKKSLAETW MVDVEMAFSE
401: LEDAMECAID FLKFVCKRIS EGCMEDLQFI LKRIDKKVME RLQLTLSSSF ERISYAEAIE VLRHAAGKRF QGKIEFGVSL TEEHESYLVD EIYKKPVIIY
501: NHPKGLGPFY VHLNDDGMTV ATFDVVLPKV GTVIRGSQSE ERFNMLSSRM EELGLQKQQY EWYLDLRRHG SVKTSGFSLM LEPLVLYATG LNDVKDVVPF
601: PRSFGRANN
101: EKINVVCQPQ PSVSILQVSD GSCVASLQVL VESALATPCQ VMATGTCLLI EGMLQQPSLQ GKHIIELHTE KILHLGLVDQ SNYPLSKKRL PLESLRDCSH
201: FRPRTTTVAS IMQIHNALTW ATHRFFQDQG FLHVQLPILT STDSEGFSEK FVVTTLLNKG KNYDQISSTE NAVVSVEAIR ASIKEKYKKV EELNRTNSNK
301: EALFAAQQDL KKTQELVSQL ETRQKANSGV TIETRKFDFT KDFFARQTHL TVSGRLHLES QACGLGNVYS FGPRFQAVKS ESKKSLAETW MVDVEMAFSE
401: LEDAMECAID FLKFVCKRIS EGCMEDLQFI LKRIDKKVME RLQLTLSSSF ERISYAEAIE VLRHAAGKRF QGKIEFGVSL TEEHESYLVD EIYKKPVIIY
501: NHPKGLGPFY VHLNDDGMTV ATFDVVLPKV GTVIRGSQSE ERFNMLSSRM EELGLQKQQY EWYLDLRRHG SVKTSGFSLM LEPLVLYATG LNDVKDVVPF
601: PRSFGRANN
001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
Arabidopsis Description
SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.