Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07998 | Canola | cytosol | 80.72 | 83.6 |
| CDX74047 | Canola | cytosol | 80.25 | 82.18 |
| Bra001250.1-P | Field mustard | cytosol | 79.62 | 81.54 |
| CDY28051 | Canola | cytosol | 80.88 | 81.52 |
| CDY35930 | Canola | cytosol | 80.72 | 81.23 |
| Bra029647.1-P | Field mustard | cytosol | 80.72 | 81.23 |
| CDY08000 | Canola | cytosol | 19.12 | 78.71 |
| VIT_07s0141g00940.t01 | Wine grape | cytosol, extracellular, plastid | 13.48 | 59.31 |
| VIT_00s2558g00010.t01 | Wine grape | cytosol | 24.92 | 58.89 |
| PGSC0003DMT400056710 | Potato | cytosol | 49.84 | 52.39 |
| Solyc09g057950.2.1 | Tomato | cytosol | 48.75 | 51.07 |
| KRH07367 | Soybean | cytosol | 49.84 | 50.96 |
| KRH66191 | Soybean | plastid | 50.16 | 50.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.44 | 45.74 |
| GSMUA_Achr8P31970_001 | Banana | mitochondrion | 34.95 | 43.9 |
| AT5G56680.1 | Thale cress | cytosol | 38.09 | 42.48 |
| AT1G70980.1 | Thale cress | cytosol | 37.3 | 41.68 |
| AT1G68420.1 | Thale cress | cytosol | 5.49 | 40.23 |
| Os12t0414500-01 | Rice | plasma membrane | 38.71 | 40.16 |
| AT4G17300.2 | Thale cress | cytosol, plastid | 31.66 | 34.41 |
| AT4G31180.1 | Thale cress | cytosol | 16.46 | 18.82 |
| AT4G26870.1 | Thale cress | cytosol | 15.36 | 18.42 |
Protein Annotations
| KEGG:00970+6.1.1.22 | MapMan:17.2.3 | EntrezGene:819930 | UniProt:A0A178VCZ7 | ProteinID:AAF02166.1 | ProteinID:AEE74540.1 |
| EMBL:AF170910 | EMBL:AJ222645 | EMBL:AK117215 | ArrayExpress:AT3G07420 | EnsemblPlantsGene:AT3G07420 | RefSeq:AT3G07420 |
| TAIR:AT3G07420 | RefSeq:AT3G07420-TAIR-G | EnsemblPlants:AT3G07420.1 | TAIR:AT3G07420.1 | InterPro:Asn-tRNA-ligase | EMBL:BT005942 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004812 | GO:GO:0004816 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006418 | GO:GO:0006421 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016874 |
| GO:GO:0019538 | RefSeq:NP_187398.1 | Symbol:NS2 | ProteinID:OAP03558.1 | PFAM:PF00152 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR22594 |
| PANTHER:PTHR22594:SF36 | UniProt:Q9SW95 | SUPFAM:SSF55681 | TIGRFAMs:TIGR00457 | UniParc:UPI00001365CF | InterPro:aa-tRNA-synt_II |
| SEG:seg | : | : | : | : | : |
Description
SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
Coordinates
chr3:-:2373913..2376975
Molecular Weight (calculated)
71367.7 Da
IEP (calculated)
9.416
GRAVY (calculated)
-0.333
Length
638 amino acids
Sequence
(BLAST)
(BLAST)
001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.