Factsheet for Os12t0414500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08000	Canola	cytosol	13.66	54.19
VIT_07s0141g00940.t01	Wine grape	cytosol, extracellular, plastid	12.68	53.79
GSMUA_AchrUn_...	Banana	cytosol	41.46	45.21
PGSC0003DMT400056710	Potato	cytosol	42.28	42.83
VIT_00s2558g00010.t01	Wine grape	cytosol	18.37	41.85
Solyc09g057950.2.1	Tomato	cytosol	41.3	41.71
GSMUA_Achr8P31970_001	Banana	mitochondrion	33.98	41.14
CDY07998	Canola	cytosol	40.81	40.75
Os01t0372700-01	Rice	plastid	36.42	40.07
CDY35930	Canola	cytosol	40.98	39.75
Bra001250.1-P	Field mustard	cytosol	40.0	39.49
CDX74047	Canola	cytosol	40.0	39.49
KRH07367	Soybean	cytosol	40.0	39.42
CDY28051	Canola	cytosol	40.49	39.34
Os07t0485400-01	Rice	cytosol	13.98	39.27
Bra029647.1-P	Field mustard	cytosol	40.33	39.12
KRH66191	Soybean	plastid	40.49	38.97
AT3G07420.1	Thale cress	cytosol	40.16	38.71
Os02t0139600-01	Rice	cytosol	10.08	17.56
Os02t0686400-01	Rice	extracellular	14.47	16.21

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	EntrezGene:4352065	ProteinID:ABA97894.1	InterPro:Asn-tRNA-ligase	ProteinID:BAF29665.1
ProteinID:BAT16870.1	ncoils:Coil	ProteinID:EAZ20264.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:Os12g0414500	EnsemblPlants:Os12t0414500-01	PFAM:PF00152	PANTHER:PTHR22594
PANTHER:PTHR22594:SF36	UniProt:Q2QSX5	SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI00006813D5	RefSeq:XP_015619090.1
InterPro:aa-tRNA-synt_II	SEG:seg	:	:	:	:

Description

Aminoacyl-tRNA synthetase, class II (D, K and N)-like domain containing protein. (Os12t0414500-01)

Coordinates

chr12:-:12762896..12765776

Molecular Weight (calculated)

66716.1 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.197

Length

615 amino acids

Sequence
(BLAST)

001: MAASSSSTSF SSSSSHEGDA GSSYIECFKY SRRATLRSVV GRPDGGAGLV GERAVVGGWV RSSAVVRARR AAAGPASPSR KPEVEATGLT CTEVLMSRVP
101: LIRCIARLMA GGITAAASAG GSARRPAVGT ALVRINDGSC VADLQIVVDS ALLPLDQITA TGACVLVEGK IEQVEGTLPQ YVVQMKVEKI LHIGPVDSEK
201: YPRSNAHSSP DLVRGYPHLA ARTATVASTA RVRSELVHAV HAFFQSNGFF HVNTPTITTT TATSAGNRGK MLRLTRLFSK SDNGNRITPE AVRAAIKEKT
301: KQVEALKRSE SNKEALEAAE QDLQRANALS RQLEQGASAE SSQDEFFHRP AYLTPCHTLH LETYACALSS VYTFSPVFQA ESESLDSDRS LAERWTVDVE
401: LAFAELEDAI SCAEDCVKSL CSTVSKDCSD ELKFLSSNQA GDATSSVIEA AVSSPWQKIK YTEAVNTLLQ VTDKTFESKL ELGMPLSRVH LSYLADDLYK
501: KPVIIYDYPK QLKPFYARLK EDLKTVSAFD LVVPKVGIVA CGAQKEERMD NLTSRIEESG LQVEQLEWYL DTRRHGTVKH SGFSIDLESL ILFVTGLKDV
601: RDAIPFHRTK GHAKC

Best Arabidopsis Sequence Match ( AT3G07420.1 )
(BLAST)

001: MESHGKTHQK EHDNDLSPKP ITLSKYSKRV ELKTLLDRSD RGAGLAGKRV VIGGWVKSAR AVKKNSPPPP LPVVAAPSPS SGGDQAHTTA NIRCTEIIQS
101: KMNIFKRFFD VLSGGGKTYP IFDKTELAGQ KAVPPPEYVF YFLISDGSSI SSLQVVVDSA LSTVPATQLM ALGTCIVAEG VLRLPLAASA KHVIELEAEK
201: LLHVGTVDPE KYPLSKKQLP LHMLRDFSHF RPRTTTVGSV TRVHSALTLA SHTFLQYHGF QYVQVPVITT TTGFGEMFRV TTLLGKTDDK EEKKPPVQEK
301: DGFSIDTVKA VIKEKTRLID HLKRSDSNRE TVVAAVHDLK KTNDLASQIE MKQKSKTGTL VKPEKLDFSK DFFGRDTYLT ASGRFHLESY ASALGKVYTF
401: GPRFIADKID NARHLAEKWN VETEMAFAEL DDAMDCADEY FKFLCKYVLE NRDEDMKFIS KRVDKTITTR LEATASSSLL RFSYTEVISL LQKATTTKFE
501: TKPEWGVALT TEHLSYLTDE IYKGPVIVHT YPKAIKQFYV RLNDDKKTVA AFDLVVPKVG VVITGSQNEE RFEILDARIG ESGFTREKFE WYLDLRRHGT
601: VKHSGISLSM EQMLLYATGL PDIKDAIPFP RSWGKANN

Arabidopsis Description

SYNC2SYNC2_ARATH [Source:UniProtKB/TrEMBL;Acc:A0A178VCZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.