Factsheet for Bra026243.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42978	Canola	plastid	97.69	97.69
CDY35583	Canola	plastid	92.9	93.39
Bra021059.1-P	Field mustard	plastid	91.47	91.64
AT4G17300.2	Thale cress	cytosol, plastid	90.76	87.05
TraesCS2A01G231500.2	Wheat	cytosol	60.92	80.9
VIT_00s0229g00020.t01	Wine grape	plastid	78.86	76.03
Solyc03g019940.2.1	Tomato	plastid	76.38	75.31
KRH04132	Soybean	plastid	73.36	75.09
KRH57405	Soybean	plastid	73.36	74.95
TraesCS2D01G235900.1	Wheat	mitochondrion	70.52	74.91
PGSC0003DMT400039341	Potato	mitochondrion, plastid	75.84	74.78
TraesCS2B01G255900.2	Wheat	mitochondrion	70.87	74.44
Zm00001d021507_P002	Maize	plastid	72.47	74.32
Zm00001d006377_P001	Maize	mitochondrion	72.47	74.32
KXG36232	Sorghum	mitochondrion	72.82	74.28
HORVU2Hr1G049240.1	Barley	mitochondrion	69.98	73.64
Os07t0485400-01	Rice	cytosol	28.6	73.52
GSMUA_Achr2P18500_001	Banana	plasma membrane	73.53	49.94
Bra006861.1-P	Field mustard	cytosol	49.02	49.73
Bra002799.1-P	Field mustard	cytosol	48.67	47.65
Bra002754.1-P	Field mustard	cytosol	36.06	34.0
Bra029647.1-P	Field mustard	cytosol	35.7	31.7
Bra001250.1-P	Field mustard	cytosol	34.46	31.14
Bra024018.1-P	Field mustard	cytosol	20.6	21.01
Bra011251.1-P	Field mustard	cytosol	20.43	20.95
Bra007014.1-P	Field mustard	cytosol	4.26	13.64
Bra011081.1-P	Field mustard	cytosol	18.65	5.93

Protein Annotations

KEGG:00970+6.1.1.22	MapMan:17.2.3	Gene3D:2.40.50.140	InterPro:Asn-tRNA-ligase	InterPro:Asp/Asn-tRNA-synth_IIb	EnsemblPlantsGene:Bra026243
EnsemblPlants:Bra026243.1	EnsemblPlants:Bra026243.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004812	GO:GO:0004816	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006421	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR006195	UniProt:M4EBT4	HAMAP:MF_00534	InterPro:NA-bd_OB-fold	InterPro:NA-bd_OB_tRNA	PFAM:PF00152
PFAM:PF01336	PRINTS:PR01042	PFscan:PS50862	PANTHER:PTHR22594	PANTHER:PTHR22594:SF44	SUPFAM:SSF50249
SUPFAM:SSF55681	TIGRFAMs:TIGR00457	UniParc:UPI000254413A	InterPro:aa-tRNA-synt_II	InterPro:aa-tRNA-synth_II	:

Description

AT4G17300 (E=1e-297) NS1, OVA8, ATNS1 | NS1; asparagine-tRNA ligase

Coordinates

chrA01:-:10444433..10447334

Molecular Weight (calculated)

62971.9 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.283

Length

563 amino acids

Sequence
(BLAST)

001: MAAAFLPATS LRLTPFSTLR FLSFFPISNP SPYSLFRPHR RPLFKDSPAN SRRRCFCTAT SASPSSSDGK NNHGNRLGSK VGEFRKKLRI AEVKGGEDEG
101: LGRVGQSLSV MGWVRTLRSQ SSVTFIEIND GSCLSNLQCV MNPEAEGYDQ VEAGSVLTGA SVSVQGTIVA SQGSKQKVEL KVHKIILVGK CDSSYPIQKK
201: RVSREFLRTK AHLRPRTNTF GAVARVRNTL AYATHKFFQE SGFVWVASPI ITASDCEGAG EQFCVTTLIP SSHETTNTSI DAIPKTKGGL VDWSQDFFGK
301: PAFLTVSGQL NGETYATALS DIYTFGPTFR AENSNTSRHL AEFWMIEPEL AFADLDDDMA CATAYLQYVV KCVLDNCKED MEFFDTWIEK GIIHRLSDVV
401: EKEFLQLSYT DAIELLLKAN KKFEFPVKWG LDLQSEHERY ITEEAFGGRP VIIRDYPKEI KAFYMRENDD GKTVAAMDML VPRVGELIGG SQREERLQVL
501: EARLDELKLD KESYWWYLDL RRYGSVPHAG FGLGFERLVQ FATGIDNIRD VIPFPRSPGS ADF

Best Arabidopsis Sequence Match ( AT4G17300.2 )
(BLAST)

001: MFQYEEEDSR NPKTVNDSIT MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT AVSESLGSGD GNKVESYEKR
101: FGSKVGEFRK KLRIAEVKGG ADEGLSRVGQ SLNIMGWVRT LRSQSSVTFI EINDGSCLSN LQCVMTSDAE GYDQVESGSI LTGASVSVQG TIVASQGTKQ
201: KVELKVEKII VVGECDSSYP IQKKRVSREF LRTKAHLRPR TNTFGAVARV RNTLAYATHK FFQESGFVWV ASPIITASDC EGAGEQFCVT TLIPSSHENT
301: DTSIDAIPKT KGGLIDWSQD FFGKPAFLTV SGQLNGETYA TALSDVYTFG PTFRAENSNT SRHLAEFWMI EPELAFADLD DDMACATAYL QYVVKYVLDN
401: CKEDMEFFDT WIEKGIIRRL SDVAEKEFLQ LGYTDAIEIL LKANKKFDFP VKWGLDLQSE HERYITEEAF GGRPVIIRDY PKEIKAFYMR ENDDGKTVAA
501: MDMLVPRIGE LIGGSQREER LEVLEARLDE LKLNKESYWW YLDLRRYGSV PHAGFGLGFE RLVQFVTGID NIRDVIPFPR TPASAEF

Arabidopsis Description

NS1Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Source:TAIR;Acc:AT4G17300]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.