CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02920
KRH07289
KRH11911
KRH18976
KRH36952
KRH66280
KRH66282

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	KRH11911	AT3G12470.1	21798944
AT5G19080.1	KRH36952	AT3G12470.1	21798944
AT5G19080.1	KRH02920	AT4G25760.1	22291198
AT5G19080.1	KRH18976	AT4G25760.1	22291198
AT5G19080.1	KRH07289	AT5G48385.1	21798944
AT5G19080.1	KRH66280	AT5G48385.1	21798944
AT5G19080.1	KRH66282	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11381	Soybean	mitochondrion	85.18	84.72
KRH51029	Soybean	mitochondrion	59.3	65.48
KRH02118	Soybean	cytosol, mitochondrion	47.17	63.41
CDY13950	Canola	cytosol	15.9	59.6
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	32.61	58.74
TraesCS1B01G258900.1	Wheat	cytosol	35.85	58.33
CDY13958	Canola	cytosol	29.65	57.29
Solyc01g080080.2.1	Tomato	nucleus	23.99	57.05
VIT_05s0020g02680.t01	Wine grape	mitochondrion	59.03	55.87
GSMUA_Achr3P09070_001	Banana	cytosol	39.89	53.82
AT3G06140.1	Thale cress	mitochondrion	50.4	52.09
CDY05235	Canola	mitochondrion	50.4	51.23
PGSC0003DMT400073576	Potato	plastid	53.1	51.17
CDY24715	Canola	mitochondrion	49.33	50.41
Bra020773.1-P	Field mustard	mitochondrion	49.33	50.41
CDX92559	Canola	mitochondrion	50.13	50.0
Bra002208.1-P	Field mustard	mitochondrion, nucleus	50.13	49.73
EES19487	Sorghum	nucleus	45.01	49.12
Os05t0397650-00	Rice	nucleus	46.09	48.17
AT5G19080.1	Thale cress	cytosol	48.79	47.88
CDY13949	Canola	mitochondrion	49.6	47.67
Zm00001d038127_P001	Maize	nucleus	43.13	47.62
KRH19856	Soybean	nucleus	43.94	46.7
KRH32464	Soybean	plastid	43.13	45.85
KRH67682	Soybean	nucleus	38.54	41.94
KRG95976	Soybean	plastid	41.24	41.8
KRH22903	Soybean	mitochondrion, nucleus	33.42	40.13
KRH05126	Soybean	cytosol	8.63	32.99

Protein Annotations

EntrezGene:100808808	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02008327	EnsemblPlantsGene:GLYMA_13G208500	UniProt:I1M144
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH20904	ProteinID:KRH20904	ProteinID:KRH20904.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233BF18
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:32252453..32255897

Molecular Weight (calculated)

41575.1 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.566

Length

371 amino acids

Sequence
(BLAST)

001: MGISWSGRRR NNYLQNRPPP PPPSYYYHTE SHPAPPPQPQ GYFLPSATPY APPPPMPPPP PPQTHSISFY YSSNPNSYGT PTLAPRFHYP QHYYHPQPQP
101: QLAAWPVPRP AAPTPPPYVD HQTAKKIRNY VNVHKDTLRL EVDDHNPDLH LLSFVFDAVY DGSITILYFA KEEEKCRFVP LYPEAFQPVR IPFQKGVGQK
201: FAQPSGTGID LGFFELDDLS KPSPGEDVFP LVICAETSLK TTSEDETPGD SLLDASPHMQ ITQGVLEKSN GAGPFLIKVV KQILWIDGVR YELRELYGIG
301: NSSAADFDDN DPGKECVICM TEPKDTAVLP CRHMCMCSEC ANAHRLQSNK CPICRQSIEE LIEIKVNNGD H

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.