CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015671_P001	Maize	cytosol	38.51	52.89
GSMUA_Achr5P14690_001	Banana	cytosol	47.9	48.21
GSMUA_Achr7P01960_001	Banana	cytosol	47.25	47.71
GSMUA_Achr11P...	Banana	cytosol	45.63	47.64
KRH19856	Soybean	nucleus	52.43	46.42
VIT_06s0004g02970.t01	Wine grape	mitochondrion	52.1	46.13
KRH32464	Soybean	plastid	51.13	45.27
KRH67682	Soybean	nucleus	49.19	44.57
TraesCS7B01G390000.1	Wheat	mitochondrion	39.16	43.84
TraesCS7A01G486700.1	Wheat	cytosol	41.75	42.57
KRH05126	Soybean	cytosol	13.27	42.27
TraesCS7D01G473200.1	Wheat	cytosol	41.1	41.91
KRG95976	Soybean	plastid	49.51	41.8
Zm00001d028475_P002	Maize	cytosol	54.05	41.75
EER92535	Sorghum	nucleus	54.05	41.54
GSMUA_Achr2P12340_001	Banana	nucleus	52.1	40.35
TraesCS4B01G220700.1	Wheat	cytosol	52.75	40.25
TraesCS4D01G221000.1	Wheat	cytosol	52.75	40.25
TraesCS4A01G083500.1	Wheat	cytosol	52.43	40.0
Os01t0374900-01	Rice	plastid	40.45	39.94
Os10t0204100-01	Rice	nucleus	52.75	38.35
HORVU0Hr1G008700.4	Barley	cytosol	50.81	37.03
HORVU7Hr1G109550.2	Barley	cytosol	39.16	36.78
KRH51029	Soybean	mitochondrion	38.51	35.42
KRH11381	Soybean	mitochondrion	42.07	34.85
KRH02118	Soybean	cytosol, mitochondrion	30.74	34.42
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	53.07	34.1
KRH20904	Soybean	mitochondrion	40.13	33.42

Protein Annotations

EMBL:ACUP02008440	EnsemblPlants:KRH22903	EnsemblPlantsGene:GLYMA_13G326700	EntrezGene:100816136	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	PFAM:PF13920
PFscan:PS50089	ProteinID:KRH22903	ProteinID:KRH22903.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0006EDE8B7	UniProt:A0A0R0GYI9	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:42158825..42161604

Molecular Weight (calculated)

35127.3 Da

IEP (calculated)

8.202

GRAVY (calculated)

-0.485

Length

309 amino acids

Sequence
(BLAST)

001: MGNIESRRRR RRHPTPPPPQ QEANTNYYFA PRLPYYPNTL LPPYHYYPQQ PPSLHHEKAV TIRNDVNIKK DTLRMEPDQH NPHHFLVTFT FDSIAPGCIT
101: VMFFAKETLD GKLIAVKKSL LKQISMPFQQ GLCQKFRQPS GTGIEISMLE ETGLTKVGDT EVYPLVLKAE VRPLNHYENE GNPSSQITLA SFGKRERGEY
201: KVQVMKQVLW VNGKRYELQE IYGIGNVSDG DSHESGGDCV ICLSEPPDIT VLPCRHMCMC SGCANLLKVH TANCPICRYP VERLLEIKVN NGYGVASCNQ
301: NNITIYLYN

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.