Factsheet for GSMUA_Achr7P01960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P23400_001
GSMUA_Achr7P05080_001
GSMUA_Achr7P16360_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	GSMUA_Achr10P...	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr11P...	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G31730.1	24036454
AT3G53410.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT3G53410.1	GSMUA_Achr10P...	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr11P...	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr1P23400_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr7P05080_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr7P16360_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr10P...	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr11P...	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr1P23400_001	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr7P05080_001	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr7P16360_001	AT5G57685.1	22291198
AT5G03200.1	GSMUA_Achr10P...	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr11P...	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr1P23400_001	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr7P05080_001	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr7P16360_001	AT4G31730.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14690_001	Banana	cytosol	78.76	78.5
GSMUA_Achr11P...	Banana	cytosol	68.3	70.61
Zm00001d015671_P001	Maize	cytosol	49.35	67.11
CDY41587	Canola	cytosol	57.52	64.0
CDX70325	Canola	cytosol	21.24	63.11
GSMUA_Achr2P12340_001	Banana	nucleus	78.43	60.15
VIT_08s0040g01940.t01	Wine grape	cytosol	65.03	54.97
PGSC0003DMT400027153	Potato	nucleus, plastid	56.86	54.89
Solyc10g084100.1.1	Tomato	nucleus, plastid	56.54	54.23
Solyc09g007700.2.1	Tomato	plastid	64.05	54.14
PGSC0003DMT400004461	Potato	plastid	64.05	53.99
KRH19856	Soybean	nucleus	60.78	53.3
AT3G53410.1	Thale cress	cytosol	51.96	53.18
Solyc10g086080.1.1	Tomato	nucleus	58.17	53.13
KRH32464	Soybean	plastid	60.46	53.01
CDY67386	Canola	cytosol	49.02	51.9
Bra003133.1-P	Field mustard	nucleus	49.02	51.9
TraesCS4B01G220700.1	Wheat	cytosol	68.63	51.85
TraesCS4D01G221000.1	Wheat	cytosol	68.63	51.85
TraesCS4A01G083500.1	Wheat	cytosol	68.3	51.6
Os10t0204100-01	Rice	nucleus	71.57	51.53
Zm00001d028475_P002	Maize	cytosol	67.32	51.5
TraesCS7B01G390000.1	Wheat	mitochondrion	46.08	51.09
EER92535	Sorghum	nucleus	66.67	50.75
CDY44348	Canola	cytosol	43.46	50.57
VIT_06s0004g02970.t01	Wine grape	mitochondrion	57.52	50.43
CDY13299	Canola	cytosol	48.37	50.34
PGSC0003DMT400045328	Potato	plastid	57.52	50.29
CDY62899	Canola	cytosol	43.46	50.0
Bra028846.1-P	Field mustard	cytosol	43.46	50.0
HORVU0Hr1G008700.4	Barley	cytosol	68.63	49.53
Bra029788.1-P	Field mustard	nucleus, plastid	60.78	48.82
KRH05126	Soybean	cytosol	15.36	48.45
KRH67682	Soybean	nucleus	52.94	47.51
CDY10400	Canola	cytosol	46.08	47.32
CDY44729	Canola	plastid	60.13	47.3
GSMUA_Achr3P09070_001	Banana	cytosol	42.48	47.27
KRH22903	Soybean	mitochondrion, nucleus	47.71	47.25
CDY41312	Canola	plastid	57.19	47.04
AT3G09770.1	Thale cress	plastid	59.48	46.91
Bra009546.1-P	Field mustard	cytosol	45.42	46.8
CDY22203	Canola	mitochondrion, plastid	56.86	46.77
Bra034086.1-P	Field mustard	nucleus, plastid	56.54	46.63
TraesCS7A01G486700.1	Wheat	cytosol	46.08	46.53
AT5G03200.1	Thale cress	mitochondrion	50.98	46.29
TraesCS7D01G473200.1	Wheat	cytosol	45.75	46.2
Os01t0374900-01	Rice	plastid	47.06	46.01
KRG95976	Soybean	plastid	54.58	45.63
HORVU7Hr1G109550.2	Barley	cytosol	46.73	43.47
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	67.32	42.83
CDX70324	Canola	cytosol	21.9	39.88
Solyc04g054680.1.1	Tomato	cytosol	39.54	33.8
Solyc04g054650.1.1	Tomato	cytosol	42.81	26.95

Protein Annotations

EnsemblPlants:GSMUA_Achr7P01960_001	EnsemblPlants:GSMUA_Achr7T01960_001	EnsemblPlantsGene:GSMUA_Achr7G01960_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294E850	UniProt:M0TDY6	MapMan:35.1

Description

Putative RING finger protein 157 [Source:GMGC_GENE;Acc:GSMUA_Achr7G01960_001]

Coordinates

chr7:+:1540325..1546596

Molecular Weight (calculated)

34273.7 Da

IEP (calculated)

6.370

GRAVY (calculated)

-0.537

Length

306 amino acids

Sequence
(BLAST)

001: MPVPLPAAFD HQHGGSGSAP HVEYPVHHPG WAGGGRYSPY GAPPPAPPYV DHHKAVTIRN DVNVKKETLR VEPDDHNTGR FLVAFTFDAT VAGSITIFFF
101: AKEDMDCNLT ATKEDLLKPV TVSFKEGLGQ KFRQPSGTGI DFSIFNKAEL VKERELDIYP LAVKAEASPS NNQGPERENQ KLGTPHLQIT QAMFEKKENG
201: EYHVRVMKQI LYVNQIRYEL QEIYGIENSV DNDTDGNDAG KECVICLSEP HDTTVLPCRH MCMCSECAKV LRFQTNRCPI CRQPVERLLE IKINNRAEQR
301: QEAAPC

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.