Factsheet for Bra029788.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007834.1-P
Bra011294.1-P
Bra013917.1-P
Bra019142.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	Bra007834.1-P	AT2G24762.1	22291198
AT3G09770.1	Bra013917.1-P	AT4G25760.1	22291198
AT3G09770.1	Bra019142.1-P	AT4G25760.1	22291198
AT3G09770.1	Bra011294.1-P	AT4G31730.1	22291198
AT3G09770.1	Bra011294.1-P	AT4G31730.1	24036454

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44729	Canola	plastid	98.16	96.14
AT3G09770.1	Thale cress	plastid	74.28	72.94
Bra034086.1-P	Field mustard	nucleus, plastid	70.6	72.51
KRH32464	Soybean	plastid	58.79	64.18
PGSC0003DMT400004461	Potato	plastid	60.89	63.91
GSMUA_Achr5P14690_001	Banana	cytosol	51.44	63.84
Solyc09g007700.2.1	Tomato	plastid	60.63	63.81
Zm00001d015671_P001	Maize	cytosol	37.53	63.56
KRH19856	Soybean	nucleus	58.01	63.32
Solyc10g084100.1.1	Tomato	nucleus, plastid	52.49	62.7
PGSC0003DMT400027153	Potato	nucleus, plastid	51.97	62.46
VIT_08s0040g01940.t01	Wine grape	cytosol	59.06	62.15
GSMUA_Achr7P01960_001	Banana	cytosol	48.82	60.78
GSMUA_Achr11P...	Banana	cytosol	46.98	60.47
Solyc10g086080.1.1	Tomato	nucleus	52.49	59.7
Bra009546.1-P	Field mustard	cytosol	46.19	59.26
PGSC0003DMT400045328	Potato	plastid	54.07	58.86
KRH67682	Soybean	nucleus	52.23	58.36
Bra003133.1-P	Field mustard	nucleus	44.09	58.13
EER92535	Sorghum	nucleus	60.1	56.97
Bra028846.1-P	Field mustard	cytosol	39.63	56.77
Zm00001d028475_P002	Maize	cytosol	59.32	56.5
KRG95976	Soybean	plastid	54.07	56.28
TraesCS4A01G083500.1	Wheat	cytosol	58.53	55.06
TraesCS4B01G220700.1	Wheat	cytosol	58.53	55.06
TraesCS4D01G221000.1	Wheat	cytosol	58.53	55.06
GSMUA_Achr2P12340_001	Banana	nucleus	57.48	54.89
Os10t0204100-01	Rice	nucleus	59.58	53.41
HORVU0Hr1G008700.4	Barley	cytosol	58.27	52.36
KRH05126	Soybean	cytosol	12.86	50.52
TraesCS7B01G390000.1	Wheat	mitochondrion	35.17	48.55
TraesCS7D01G473200.1	Wheat	cytosol	37.8	47.52
TraesCS7A01G486700.1	Wheat	cytosol	37.27	46.86
Os01t0374900-01	Rice	plastid	37.53	45.69
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	55.12	43.66
HORVU7Hr1G109550.2	Barley	cytosol	36.22	41.95
Bra020773.1-P	Field mustard	mitochondrion	38.58	40.5
Bra002208.1-P	Field mustard	mitochondrion, nucleus	38.32	39.04
Solyc04g054680.1.1	Tomato	cytosol	34.38	36.59
Solyc04g054650.1.1	Tomato	cytosol	36.48	28.6

Protein Annotations

EnsemblPlants:Bra029788.1	EnsemblPlants:Bra029788.1-P	EnsemblPlantsGene:Bra029788	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002547B2C	UniProt:M4ELW8	MapMan:35.1

Description

AT3G09770 (E=5e-119) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:+:22266277..22267675

Molecular Weight (calculated)

41814.1 Da

IEP (calculated)

5.873

GRAVY (calculated)

-0.651

Length

381 amino acids

Sequence
(BLAST)

001: MGNISSSGGD RRRRRRSNTL PTAAPPPPPP PATEPPPNRI VFAAATPYPN PNQHYHQYPG YYPPPPGTML PSPYDHHHHH YPPPPPPPHP YHHPHPWTAG
101: GRYPYAGAMV PQPQPCVEHQ KAVTIRNDVN LKRESLKLEP DPDNPGRFLV SFTFDATVSG RITVIFFAKE SEECVLTATK EDVLPPITMD FEVGLGQKFK
201: QPSGTGIDFS LFEEAELFKA AEADVYPLAV KAEAAAAPGG DGEEAESVGS KNAQITQAVY EKDKGEIKIR VVKQILWVNE TRYELQEIYG IGNSVDGDDD
301: SADDANDPGK ECVICLSEPR DTTVLPCRHM CMCSGCAKVL RFQTNRCPIC RQPVERLLEI KVHGNSGSGN NAEQGATGEQ E

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.