Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009804.1-P | |
| Bra011294.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03200.1 | Bra011294.1-P | AT4G31730.1 | 22291198 |
| AT5G03200.1 | Bra009804.1-P | AT5G24920.1 | 22291198 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62899 | Canola | cytosol | 100.0 | 100.0 |
| Bra009546.1-P | Field mustard | cytosol | 53.76 | 48.15 |
| AT5G03200.1 | Thale cress | mitochondrion | 60.53 | 47.77 |
| Zm00001d015671_P001 | Maize | cytosol | 37.97 | 44.89 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 50.0 | 43.46 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 50.0 | 43.32 |
| GSMUA_Achr11P... | Banana | cytosol | 46.99 | 42.23 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 58.65 | 42.05 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 49.62 | 41.64 |
| Bra003133.1-P | Field mustard | nucleus | 45.11 | 41.52 |
| Solyc10g086080.1.1 | Tomato | nucleus | 50.75 | 40.3 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 48.12 | 40.13 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 56.77 | 39.63 |
| PGSC0003DMT400045328 | Potato | plastid | 51.88 | 39.43 |
| KRH05126 | Soybean | cytosol | 14.29 | 39.18 |
| Solyc09g007700.2.1 | Tomato | plastid | 52.26 | 38.4 |
| PGSC0003DMT400004461 | Potato | plastid | 52.26 | 38.29 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 51.5 | 37.85 |
| KRH19856 | Soybean | nucleus | 49.25 | 37.54 |
| KRH32464 | Soybean | plastid | 49.25 | 37.54 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 38.72 | 37.32 |
| KRH67682 | Soybean | nucleus | 47.74 | 37.24 |
| KRG95976 | Soybean | plastid | 49.25 | 35.79 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 39.85 | 34.98 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 39.85 | 34.98 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 51.13 | 33.58 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 51.13 | 33.58 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 51.13 | 33.58 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 50.0 | 33.33 |
| EER92535 | Sorghum | nucleus | 50.0 | 33.08 |
| Zm00001d028475_P002 | Maize | cytosol | 49.62 | 33.0 |
| Os10t0204100-01 | Rice | nucleus | 52.63 | 32.94 |
| Os01t0374900-01 | Rice | plastid | 38.35 | 32.59 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 39.47 | 31.91 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 50.75 | 31.84 |
| Solyc04g054680.1.1 | Tomato | cytosol | 37.97 | 28.21 |
| Bra020773.1-P | Field mustard | mitochondrion | 37.97 | 27.82 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 49.62 | 27.44 |
| Bra002208.1-P | Field mustard | mitochondrion, nucleus | 36.09 | 25.67 |
| Solyc04g054650.1.1 | Tomato | cytosol | 39.47 | 21.6 |
Protein Annotations
| EnsemblPlants:Bra028846.1 | EnsemblPlants:Bra028846.1-P | EnsemblPlantsGene:Bra028846 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF0 | PFAM:PF13920 | PFscan:PS50089 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00025436AF | UniProt:M4EJ80 | MapMan:35.1 | : |
Description
AT5G03200 (E=4e-084) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA02:-:1769964..1770932
Molecular Weight (calculated)
29823.9 Da
IEP (calculated)
6.147
GRAVY (calculated)
-0.348
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNIFCCCCR IRDGGKKHKV PATTRTPYIE YQKPATIRNE VNLRKETLRL RPDPENPGQL LVSFSFDATV PARNRITLVF FAEEDSEFNL TATKGDTLPL
101: ITFDFEKEGL GHKYVQPSGT GVDLSLLEDS ELFKEDVGTC IYPLAVKMEA AAAPEEGKST NAQITQVTFV KEKGEVKIRV VKQLLWVNGA RYELQDIYGT
201: DQGKECVVCL SELRDTIVLP CRHMCMCSGC AKALRFQKNE CPVCRQPAER LMELEGNGYC DGDKHI
101: ITFDFEKEGL GHKYVQPSGT GVDLSLLEDS ELFKEDVGTC IYPLAVKMEA AAAPEEGKST NAQITQVTFV KEKGEVKIRV VKQLLWVNGA RYELQDIYGT
201: DQGKECVVCL SELRDTIVLP CRHMCMCSGC AKALRFQKNE CPVCRQPAER LMELEGNGYC DGDKHI
001: MGNLISLIFC CGRRQRSNIP PAMETAPLEL PPNRFVFAAV PPYLNPNPNY VDQYPGNCLP PPVTEPPMLP YNFNHLHHYP PNSYQLPHPL FHGGRYPILP
101: PPTYVHQKAV TIRNDVNLKK KTLTLIPDPE NPNRLLVSFT FDASMPGRIT VVFFATEDAE CNLRATKEDT LPPITFDFGE GLGQKFIQSS GTGIDLTAFK
201: DSELFKEVDT DVFPLAVKAE ATPAEEGKSG STNVQITQVV YTKEKGEIKI EVVKQILWVN KRRYELLEIY GIENTVDGSD EGKECVVCLS EPRDTTVLPC
301: RHMCMCSGCA KALRFQTNLC PVCRQPVEML LEINKNG
101: PPTYVHQKAV TIRNDVNLKK KTLTLIPDPE NPNRLLVSFT FDASMPGRIT VVFFATEDAE CNLRATKEDT LPPITFDFGE GLGQKFIQSS GTGIDLTAFK
201: DSELFKEVDT DVFPLAVKAE ATPAEEGKSG STNVQITQVV YTKEKGEIKI EVVKQILWVN KRRYELLEIY GIENTVDGSD EGKECVVCLS EPRDTTVLPC
301: RHMCMCSGCA KALRFQTNLC PVCRQPVEML LEINKNG
Arabidopsis Description
LUL1Probable E3 ubiquitin-protein ligase LUL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYW5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.