Factsheet for PGSC0003DMT400073576

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400053214
PGSC0003DMT400071153

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	PGSC0003DMT400053214	AT5G48385.1	21798944
AT5G19080.1	PGSC0003DMT400071153	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098750.2.1	Tomato	plastid	87.27	87.05
CDY13950	Canola	cytosol	16.36	63.64
CDY13958	Canola	cytosol	28.57	57.29
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	30.39	56.8
TraesCS1B01G258900.1	Wheat	cytosol	33.25	56.14
GSMUA_Achr3P09070_001	Banana	cytosol	39.48	55.27
KRH51029	Soybean	mitochondrion	47.53	54.46
KRH20904	Soybean	mitochondrion	51.17	53.1
KRH11381	Soybean	mitochondrion	51.17	52.81
Bra020773.1-P	Field mustard	mitochondrion	47.01	49.86
KRH02118	Soybean	cytosol, mitochondrion	35.58	49.64
CDY24715	Canola	mitochondrion	46.75	49.59
CDY05235	Canola	mitochondrion	46.75	49.32
AT3G06140.1	Thale cress	mitochondrion	45.45	48.75
EES19487	Sorghum	nucleus	42.6	48.24
CDX92559	Canola	mitochondrion	45.71	47.31
VIT_14s0128g00180.t01	Wine grape	mitochondrion	54.29	46.97
Bra002208.1-P	Field mustard	mitochondrion, nucleus	45.45	46.79
Zm00001d038127_P001	Maize	nucleus	40.78	46.73
Os05t0397650-00	Rice	nucleus	42.08	45.63
CDY13949	Canola	mitochondrion	45.19	45.08
AT5G19080.1	Thale cress	cytosol	44.16	44.97
PGSC0003DMT400027153	Potato	nucleus, plastid	35.58	43.22
PGSC0003DMT400004461	Potato	plastid	40.0	42.42
PGSC0003DMT400045328	Potato	plastid	35.84	39.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400073576	EnsemblPlantsGene:PGSC0003DMG400028580	EntrezGene:102585008	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
PGSC:PGSC0003DMG400028580	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00029645D8	UniProt:M1CS98
MapMan:35.1	:	:	:	:	:

Description

Mahogunin [Source:PGSC_GENE;Acc:PGSC0003DMG400028580]

Coordinates

chr1:+:76413776..76420502

Molecular Weight (calculated)

43247.4 Da

IEP (calculated)

6.721

GRAVY (calculated)

-0.584

Length

385 amino acids

Sequence
(BLAST)

001: MGISWSKRHQ NHHLHHHPPP PVLPLPSSSI APPFPSLSPP PLPPPHPTYS LPPPSTTPPP SRNPYPLLTP PPPPNYPPPS NSNYHFCFSQ SSYGTRPVVY
101: HNQYPPYYHP HSNNGWGGFR PPPPPPPPLP AVPYVDHQNA KKIKNDVNLH KDTIRVHVDE FNKDFHLVSF TFDALVDGSI TIFYFAKEGP NCKFNPVYPE
201: IKPVQIPFVK GLGQKFCQPS GTGIDLGFFD VNDLSKPLQG EEIFPLVISA ESCLPSTPLD EKYDGQSLDK SPHSQITEAV LVKNNEDHFQ VKVIKQILWI
301: EGVRYELREI YGINNSEETN VNDEESGKEC VICMTEPKDT AVLPCRHMCL CGECAKELRH QSNKCPICRQ PIEELLEIKV NEGKT

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.