Factsheet for HORVU1Hr1G062460.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022370.1
HORVU1Hr1G003060.2
HORVU1Hr1G003070.1
HORVU1Hr1G003080.1
HORVU4Hr1G013760.1
HORVU5Hr1G051330.1
HORVU6Hr1G030050.2
HORVU7Hr1G111310.2
HORVU7Hr1G111320.1
HORVU7Hr1G111350.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	HORVU0Hr1G022370.1	AT4G25760.1	22291198
AT5G19080.1	HORVU1Hr1G003060.2	AT4G25760.1	22291198
AT5G19080.1	HORVU1Hr1G003070.1	AT4G25760.1	22291198
AT5G19080.1	HORVU1Hr1G003080.1	AT4G25760.1	22291198
AT5G19080.1	HORVU4Hr1G013760.1	AT4G25760.1	22291198
AT5G19080.1	HORVU6Hr1G030050.2	AT4G25760.1	22291198
AT5G19080.1	HORVU7Hr1G111310.2	AT4G25760.1	22291198
AT5G19080.1	HORVU7Hr1G111320.1	AT4G25760.1	22291198
AT5G19080.1	HORVU7Hr1G111350.1	AT4G25760.1	22291198
AT5G19080.1	HORVU5Hr1G051330.1	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G258900.1	Wheat	cytosol	96.12	86.84
CDY13950	Canola	cytosol	30.1	62.63
CDY13958	Canola	cytosol	52.91	56.77
Solyc01g080080.2.1	Tomato	nucleus	37.38	49.36
EES19487	Sorghum	nucleus	80.1	48.53
Zm00001d038127_P001	Maize	nucleus	79.13	48.51
Os05t0397650-00	Rice	nucleus	80.1	46.48
GSMUA_Achr3P09070_001	Banana	cytosol	58.74	44.0
KRH51029	Soybean	mitochondrion	56.31	34.52
KRH20904	Soybean	mitochondrion	58.74	32.61
KRH11381	Soybean	mitochondrion	58.74	32.44
KRH02118	Soybean	cytosol, mitochondrion	43.2	32.25
AT3G06140.1	Thale cress	mitochondrion	53.88	30.92
Solyc01g098750.2.1	Tomato	plastid	57.77	30.83
CDX92559	Canola	mitochondrion	55.34	30.65
CDY24715	Canola	mitochondrion	53.88	30.58
Bra020773.1-P	Field mustard	mitochondrion	53.88	30.58
CDY05235	Canola	mitochondrion	53.88	30.41
PGSC0003DMT400073576	Potato	plastid	56.8	30.39
CDY13949	Canola	mitochondrion	56.31	30.05
Bra002208.1-P	Field mustard	mitochondrion, nucleus	54.37	29.95
AT5G19080.1	Thale cress	cytosol	54.85	29.89
VIT_05s0020g02680.t01	Wine grape	mitochondrion	56.31	29.59
HORVU7Hr1G109550.2	Barley	cytosol	43.69	27.36
VIT_14s0128g00180.t01	Wine grape	mitochondrion	55.34	25.62
HORVU0Hr1G008700.4	Barley	cytosol	52.43	25.47

Protein Annotations

EnsemblPlants:HORVU1Hr1G062460.2	EnsemblPlantsGene:HORVU1Hr1G062460	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
PIRSF:PIRSF036836	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B48460E	UniProt:A0A287FWU8	MapMan:35.1

Description

No Description!

Coordinates

chrchr1H:-:449868908..449869847

Molecular Weight (calculated)

22935.4 Da

IEP (calculated)

4.542

GRAVY (calculated)

-0.243

Length

206 amino acids

Sequence
(BLAST)

001: CIQGFLVIHY FAKEGKDCNF SSVYPDLQTP TKIPFQKGLA QNYVQPSGSG IDLGFFSLDE LSNPSEEVYP LVVYAEASPS PEEGDQTVNS TRAQITLAVI
101: EKHNDDLQVK VVKQILWIKG VRYELKEIYG IVNSTEADVP DADDDGMGKE CVICLTEPRD TAVFPCRHLC MCSECAQALR LQSNKCPICR QPVEKLMEIK
201: VRSAEP

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.