Factsheet for Zm00001d053897_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009837_P001
Zm00001d016719_P001
Zm00001d025379_P001
Zm00001d037596_P001
Zm00001d038127_P001
Zm00001d038280_P001
Zm00001d040789_P001
Zm00001d050689_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16740.1	Zm00001d009837_P001	AT2G47700.1	21798944
AT2G16740.1	Zm00001d037596_P001	AT2G47700.1	21798944
AT2G16740.1	Zm00001d040789_P001	AT2G47700.1	21798944
AT2G16740.1	Zm00001d016719_P001	AT3G18710.1	21798944
AT2G16740.1	Zm00001d025379_P001	AT3G18710.1	21798944
AT2G16740.1	Zm00001d038280_P001	AT3G18710.1	21798944
AT2G16740.1	Zm00001d050689_P001	AT3G18710.1	21798944
AT2G16740.1	Zm00001d038127_P001	AT5G19080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29317	Sorghum	nucleus	97.97	97.97
Os02t0120600-01	Rice	cytosol	95.27	95.27
TraesCS6D01G069000.1	Wheat	cytosol	93.92	93.29
TraesCS6B01G095200.1	Wheat	cytosol	93.92	93.29
TraesCS6A01G071100.1	Wheat	cytosol	93.92	93.29
GSMUA_Achr3P26650_001	Banana	cytosol, mitochondrion, peroxisome	89.19	89.19
Zm00001d001913_P001	Maize	cytosol	87.84	87.84
VIT_03s0038g02390.t01	Wine grape	cytosol	87.84	87.84
KRH24311	Soybean	cytosol	87.84	87.84
Zm00001d012513_P001	Maize	mitochondrion	87.16	87.16
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	87.16	87.16
KRH29288	Soybean	cytosol	87.16	87.16
GSMUA_Achr7P17820_001	Banana	cytosol	86.49	86.49
PGSC0003DMT400009229	Potato	nucleus	84.46	84.46
Solyc02g083570.2.1	Tomato	cytosol	84.46	84.46
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	84.46	84.46
PGSC0003DMT400058107	Potato	cytosol, mitochondrion	83.78	83.78
Zm00001d019981_P003	Maize	cytosol	82.43	82.43
AT2G16740.1	Thale cress	cytosol	81.76	81.76
CDY31408	Canola	cytosol	81.08	81.08
CDX71304	Canola	cytosol, mitochondrion, nucleus	80.41	80.41
Zm00001d010618_P003	Maize	cytosol	87.84	79.75
CDY02238	Canola	cytosol	79.05	79.05
Bra013049.1-P	Field mustard	cytosol	79.05	79.05
CDX89747	Canola	cytosol	78.38	78.38
Zm00001d005532_P003	Maize	cytosol, mitochondrion	83.11	67.21
Zm00001d011500_P014	Maize	cytosol	72.3	66.05
Bra001995.1-P	Field mustard	cytosol	79.73	65.56
Zm00001d037052_P001	Maize	cytosol	66.22	61.64
Zm00001d043998_P001	Maize	cytosol	85.81	54.04
Zm00001d009552_P002	Maize	cytosol	47.3	44.03
Zm00001d038995_P001	Maize	cytosol	47.97	43.56
Zm00001d043905_P003	Maize	cytosol	47.97	42.01
Zm00001d021904_P001	Maize	plastid	48.65	39.13
Zm00001d034404_P001	Maize	mitochondrion	41.22	37.65
Zm00001d013092_P002	Maize	mitochondrion	41.89	35.63
Zm00001d011565_P002	Maize	cytosol, mitochondrion	47.3	35.18
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	40.54	33.71
Zm00001d007897_P002	Maize	mitochondrion	40.54	28.04
Zm00001d018884_P002	Maize	mitochondrion	40.54	27.03

Protein Annotations

EntrezGene:103654927	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	ProteinID:AQK60673.1	UniProt:B4FSG6	EMBL:BT040054
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF47	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0000E64A1B	EnsemblPlantsGene:Zm00001d053897	EnsemblPlants:Zm00001d053897_P001	EnsemblPlants:Zm00001d053897_T001	SEG:seg	:

Description

Ubiquitin-conjugating enzyme E2 29

Coordinates

chr4:+:243335691..243336772

Molecular Weight (calculated)

16511.9 Da

IEP (calculated)

7.978

GRAVY (calculated)

-0.241

Length

148 amino acids

Sequence
(BLAST)

001: MALRRIIKEL KDLQRDPPTS CSAGPVSDDM FHWQATIMGP SDSPYSGGVF LVAIHFPPDY PFKPPKVAFK TKVFHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSVCSLL TDPNPDDPLV PEIAHMCKTD RLRYESTARG WTHKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.