Factsheet for Zm00001d012513_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	100.0	100.0
EES01663	Sorghum	cytosol, nucleus, peroxisome	100.0	100.0
Zm00001d001913_P001	Maize	cytosol	95.95	95.95
Zm00001d010618_P003	Maize	cytosol	99.32	90.18
Zm00001d019981_P003	Maize	cytosol	89.19	89.19
Zm00001d053897_P001	Maize	mitochondrion	87.16	87.16
Zm00001d005532_P003	Maize	cytosol, mitochondrion	89.86	72.68
Zm00001d011500_P014	Maize	cytosol	75.0	68.52
Zm00001d037052_P001	Maize	cytosol	68.92	64.15
Zm00001d043998_P001	Maize	cytosol	89.86	56.6
Zm00001d009552_P002	Maize	cytosol	47.97	44.65
Zm00001d038995_P001	Maize	cytosol	48.65	44.17
Zm00001d043905_P003	Maize	cytosol	48.65	42.6
Zm00001d021904_P001	Maize	plastid	52.03	41.85
Zm00001d034404_P001	Maize	mitochondrion	42.57	38.89
Zm00001d013092_P002	Maize	mitochondrion	43.24	36.78
Zm00001d011565_P002	Maize	cytosol, mitochondrion	47.97	35.68
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	41.89	34.83
Zm00001d007897_P002	Maize	mitochondrion	41.89	28.97
Zm00001d018884_P002	Maize	mitochondrion	41.89	27.93

Protein Annotations

EntrezGene:100192684	EntrezGene:103651070	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	ProteinID:AQK99696.1	UniProt:B4FC97
EMBL:BT034735	EMBL:BT087770	EMBL:EU953150	EMBL:EU958768	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135
ProteinID:ONM36826.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF55
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0000E64A16
EnsemblPlantsGene:Zm00001d012513	EnsemblPlants:Zm00001d012513_P001	EnsemblPlants:Zm00001d012513_T001	:	:	:

Description

Ubiquitin-conjugating enzyme E2 11

Coordinates

chr8:-:175871642..175876540

Molecular Weight (calculated)

16487.9 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.364

Length

148 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPAGEDM FHWQATIMGP PDSPYAGGVF LVNIHFPPDY PFKPPKVSFK TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RPKYEATARS WTQKYAMG

Best Arabidopsis Sequence Match ( AT3G08690.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPSN CSAGPVAEDM FHWQATIMGP PESPYAGGVF LVSIHFPPDY PFKPPKVSFK TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYESTARS WTQKYAMG

Arabidopsis Description

UBC11Ubiquitin-conjugating enzyme E2 11 [Source:UniProtKB/Swiss-Prot;Acc:P35134]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.