Factsheet for Zm00001d019981_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98641	Sorghum	cytosol	99.32	99.32
Os09t0293400-01	Rice	cytosol	96.62	96.62
TraesCS5B01G174300.1	Wheat	cytosol	94.59	94.59
HORVU5Hr1G053810.1	Barley	cytosol	93.92	93.92
TraesCS5A01G177100.1	Wheat	cytosol	93.92	93.92
GSMUA_Achr1P16460_001	Banana	cytosol, nucleus, vacuole	56.76	93.33
Zm00001d043070_P001	Maize	cytosol, nucleus, peroxisome	89.19	89.19
Zm00001d012513_P001	Maize	mitochondrion	89.19	89.19
Zm00001d001913_P001	Maize	cytosol	88.51	88.51
Zm00001d053897_P001	Maize	mitochondrion	82.43	82.43
Zm00001d010618_P003	Maize	cytosol	89.19	80.98
Zm00001d005532_P003	Maize	cytosol, mitochondrion	97.97	79.23
TraesCS5D01G181400.1	Wheat	cytosol, plastid	93.92	72.4
Zm00001d011500_P014	Maize	cytosol	72.3	66.05
Zm00001d037052_P001	Maize	cytosol	65.54	61.01
Zm00001d043998_P001	Maize	cytosol	85.14	53.62
Zm00001d009552_P002	Maize	cytosol	48.65	45.28
Zm00001d038995_P001	Maize	cytosol	49.32	44.79
Zm00001d043905_P003	Maize	cytosol	49.32	43.2
Zm00001d021904_P001	Maize	plastid	52.7	42.39
Zm00001d034404_P001	Maize	mitochondrion	40.54	37.04
Zm00001d011565_P002	Maize	cytosol, mitochondrion	48.65	36.18
Zm00001d013092_P002	Maize	mitochondrion	41.22	35.06
Zm00001d036054_P001	Maize	cytosol, nucleus, plastid	39.86	33.15
Zm00001d007897_P002	Maize	mitochondrion	40.54	28.04
Zm00001d018884_P002	Maize	mitochondrion	40.54	27.03

Protein Annotations

EntrezGene:100192813	MapMan:19.2.2.5.2	Gene3D:3.10.110.10	UniProt:B4FCQ9	EMBL:BT034897	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740
InterPro:IPR000608	InterPro:IPR016135	ProteinID:ONM54026.1	ProteinID:ONM54027.1	ProteinID:ONM54028.1	ProteinID:ONM54029.1
ProteinID:ONM54030.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF55
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI00017B67F2
EnsemblPlantsGene:Zm00001d019981	EnsemblPlants:Zm00001d019981_P003	EnsemblPlants:Zm00001d019981_T003	SEG:seg	:	:

Description

Ubiquitin-conjugating enzyme E2 30

Coordinates

chr7:+:81821997..81825706

Molecular Weight (calculated)

16679.9 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.480

Length

148 amino acids

Sequence
(BLAST)

001: MASKRIQKEL MDLQKDPPTS CSAGPAGEDL FHWQATIMGP SDSPYAGGVF FINIHFPPDY PFKPPKVNFQ TKVYHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSISSLL TDPNPDDPLV PEIAHMYKNQ RQRYEETARA WTQKYAMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.