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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • plastid 1
  • endoplasmic reticulum 4
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:endoplasmic reticulum
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42568 Canola plastid 46.46 56.55
CDY36364 Canola mitochondrion 47.08 55.43
AT3G27420.1 Thale cress nucleus 36.31 48.36
GSMUA_Achr6P22990_001 Banana cytosol 13.85 34.09
VIT_14s0066g00150.t01 Wine grape nucleus 29.85 26.43
KRG94362 Soybean extracellular 25.85 26.17
KRH07095 Soybean nucleus 24.62 25.08
HORVU3Hr1G092230.1 Barley cytosol 6.15 25.0
Solyc02g067900.2.1 Tomato cytosol 24.31 24.09
PGSC0003DMT400017933 Potato cytosol 23.08 22.52
KXG33957 Sorghum nucleus 17.23 20.59
TraesCS3A01G414200.1 Wheat nucleus 16.0 19.85
TraesCS3D01G408700.2 Wheat nucleus 16.92 19.64
TraesCS3B01G449000.1 Wheat cytosol 16.62 18.18
Protein Annotations
Gene3D:1.20.1270.220MapMan:35.2EntrezGene:834059ProteinID:AED94571.1ArrayExpress:AT5G40600EnsemblPlantsGene:AT5G40600
RefSeq:AT5G40600TAIR:AT5G40600RefSeq:AT5G40600-TAIR-GEnsemblPlants:AT5G40600.1TAIR:AT5G40600.1Unigene:At.55280
ncoils:CoilUniProt:F4KIP2GO:GO:0003674InterPro:IPR027353InterPro:IPR038336InterPro:NET_dom
InterPro:NET_sfRefSeq:NP_198876.2PFAM:PF17035PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PFscan:PS51525UniParc:UPI0001E9302F:
Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
Coordinates
chr5:-:16253469..16256829
Molecular Weight (calculated)
36762.3 Da
IEP (calculated)
5.316
GRAVY (calculated)
-0.245
Length
325 amino acids
Sequence
(BLAST)
001: MTIPVPLESL FPLLHRSVNC SFLPGGAILI SGDFSDFIVE QDLFDNVGFE IARLVARLVF FSLSGAEICF CYIPESAMSK RAAEEMTPSL ESNRTGPDFF
101: GYYRAQVEEL LSQEEKIPHH NHVDAKKSSA EIIGAELSDV KQEKLNALLR QCVLNSIPEV DEMQSRVDSM YLMSQLSNKK RSTLPTNAES VIPEDPRCKE
201: VEDDLRLLMK SDPSLVKEIV GKHSSDLLAR LNERQQHLEK LLDNVVTTCR PMSRGEKRDL QKSIKELPAK NLERVAGIIK NHYVALGKEM PDDVFVINME
301: EEDKVLLWRL HYFVVAVQSA RKLAS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.