Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g067340.2.1 | Tomato | nucleus | 94.47 | 94.47 |
| PGSC0003DMT400019058 | Potato | nucleus | 78.66 | 76.25 |
| GSMUA_Achr7P19340_001 | Banana | nucleus | 37.55 | 49.48 |
| GSMUA_Achr2P05100_001 | Banana | nucleus | 34.39 | 45.79 |
| Bra019123.1-P | Field mustard | nucleus | 34.39 | 44.85 |
| PGSC0003DMT400073710 | Potato | nucleus | 37.94 | 44.24 |
| KRH61669 | Soybean | nucleus | 36.76 | 42.27 |
| CDX72327 | Canola | nucleus | 47.43 | 42.11 |
| GSMUA_Achr3P13440_001 | Banana | nucleus | 45.45 | 41.82 |
| GSMUA_Achr11P... | Banana | nucleus | 39.92 | 41.22 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 51.38 | 41.01 |
| GSMUA_Achr10P... | Banana | nucleus | 37.55 | 40.95 |
| GSMUA_Achr5P16460_001 | Banana | nucleus | 37.94 | 40.85 |
| AT2G25000.1 | Thale cress | nucleus | 43.08 | 40.22 |
| CDX75196 | Canola | nucleus | 44.66 | 39.93 |
| KRH15674 | Soybean | nucleus | 43.48 | 39.01 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 43.08 | 38.93 |
| HORVU5Hr1G065380.2 | Barley | nucleus | 26.48 | 38.51 |
| GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 33.6 | 38.12 |
| AT4G31800.1 | Thale cress | nucleus | 46.64 | 38.06 |
| Bra011299.1-P | Field mustard | nucleus | 46.25 | 36.91 |
| CDY39879 | Canola | nucleus | 44.66 | 36.81 |
| CDX68787 | Canola | nucleus | 45.85 | 36.36 |
| Bra010220.1-P | Field mustard | nucleus | 44.27 | 36.36 |
| PGSC0003DMT400051047 | Potato | nucleus | 50.59 | 36.06 |
| KRH05350 | Soybean | nucleus | 43.87 | 35.58 |
| GSMUA_Achr10P... | Banana | nucleus | 39.53 | 34.72 |
| CDY70096 | Canola | nucleus | 46.64 | 34.2 |
| Bra023983.1-P | Field mustard | nucleus | 46.64 | 34.2 |
| PGSC0003DMT400073396 | Potato | nucleus | 48.62 | 34.17 |
| KRH52329 | Soybean | nucleus | 40.71 | 33.33 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 37.55 | 32.87 |
| Zm00001d053746_P001 | Maize | nucleus | 41.11 | 32.4 |
| Zm00001d015515_P001 | Maize | nucleus | 43.87 | 31.99 |
| GSMUA_Achr1P10080_001 | Banana | nucleus | 42.29 | 31.94 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 41.11 | 31.8 |
| Os02t0181300-01 | Rice | nucleus | 43.48 | 31.61 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 40.71 | 31.5 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 43.87 | 31.44 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 43.48 | 31.43 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 43.08 | 31.32 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 40.32 | 31.29 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 33.2 | 31.0 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 43.48 | 30.99 |
| Os06t0649000-01 | Rice | nucleus | 41.11 | 30.86 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 39.92 | 30.7 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 32.81 | 30.63 |
| EES04642 | Sorghum | nucleus | 43.87 | 30.49 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 38.74 | 30.43 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 38.34 | 30.41 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 39.13 | 30.37 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 38.74 | 30.25 |
| Os09t0417600-02 | Rice | nucleus | 38.74 | 29.97 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 38.74 | 29.88 |
| Zm00001d020492_P001 | Maize | nucleus | 35.18 | 29.47 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 33.2 | 29.07 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 39.92 | 29.02 |
| Zm00001d020495_P001 | Maize | nucleus | 30.04 | 28.57 |
| EER90124 | Sorghum | nucleus | 38.34 | 28.36 |
| Zm00001d046805_P001 | Maize | nucleus | 39.13 | 28.21 |
| Zm00001d036726_P001 | Maize | nucleus | 38.34 | 28.2 |
| KXG35639 | Sorghum | nucleus | 32.41 | 27.8 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 36.36 | 27.79 |
| EER88729 | Sorghum | nucleus | 37.94 | 27.59 |
| EER98905 | Sorghum | nucleus, plastid | 35.57 | 27.52 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 35.97 | 27.49 |
| TraesCS7D01G497300.1 | Wheat | plastid | 40.32 | 27.42 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 34.78 | 26.67 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 34.78 | 26.59 |
| Os09t0417800-01 | Rice | nucleus | 32.81 | 26.1 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 40.32 | 25.12 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 35.57 | 24.26 |
| Zm00001d005749_P001 | Maize | nucleus | 33.6 | 24.22 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 36.36 | 23.53 |
| PGSC0003DMT400076591 | Potato | nucleus | 27.67 | 16.95 |
| PGSC0003DMT400056725 | Potato | nucleus | 30.04 | 15.32 |
| PGSC0003DMT400017859 | Potato | nucleus | 26.09 | 14.9 |
| PGSC0003DMT400038852 | Potato | nucleus | 30.43 | 13.82 |
| PGSC0003DMT400042400 | Potato | nucleus | 30.04 | 13.74 |
| PGSC0003DMT400046570 | Potato | nucleus | 26.48 | 12.76 |
Protein Annotations
| EntrezGene:102600986 | MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | UniProt:M1ABK3 |
| PFAM:PF03106 | EnsemblPlantsGene:PGSC0003DMG402007388 | PGSC:PGSC0003DMG402007388 | EnsemblPlants:PGSC0003DMT400019061 | PFscan:PS50811 | PANTHER:PTHR31429 |
| PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0002969FAC | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| RefSeq:XP_015170804.1 | : | : | : | : | : |
Description
MRNA, 1346 bp sequence [Source:PGSC_GENE;Acc:PGSC0003DMG402007388]
Coordinates
chr8:+:40843264..40845641
Molecular Weight (calculated)
28723.0 Da
IEP (calculated)
8.896
GRAVY (calculated)
-0.653
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKSFFIDL NTNPLLHNIN RSPIPRETLD EELSRMRKEN KKLATTLTSL CEKYNSLQTH IIELQQKYST HEEDNSKLLL SRKRKAEEEY CVNNSYINIE
101: EASPKRPREI ITNISTVCVK TSPSDQTSVV KDGYNWRKYG QKVTRDNPSP RAYFKCSFAP TCPVKKKVQR SVKDASILVA TYEGEHNHPQ PSQAEITVPL
201: VNASDPTFLN KFMEDINTNS LQQQYLVEQM ASSLSKNPSF AATVATAISG LLF
101: EASPKRPREI ITNISTVCVK TSPSDQTSVV KDGYNWRKYG QKVTRDNPSP RAYFKCSFAP TCPVKKKVQR SVKDASILVA TYEGEHNHPQ PSQAEITVPL
201: VNASDPTFLN KFMEDINTNS LQQQYLVEQM ASSLSKNPSF AATVATAISG LLF
001: MDYDPNTNPF DLHFSGKLPK RNMLQDEINR VNSENKKLTE MLARVCEKYY ALNNLMEELQ SRKSPESVNF QNKQLTGKRK QELDEFVSSP IGLSLGPIEN
101: ITNDKATVST AYFAAEKSDT SLTVKDGYQW RKYGQKITRD NPSPRAYFRC SFSPSCLVKK KVQRSAEDPS FLVATYEGTH NHTGPHASVS RTVKLDLVQG
201: GLEPVEEKKE RGTIQEVLVQ QMASSLTKDP KFTAALATAI SGRLIEHSRT
101: ITNDKATVST AYFAAEKSDT SLTVKDGYQW RKYGQKITRD NPSPRAYFRC SFSPSCLVKK KVQRSAEDPS FLVATYEGTH NHTGPHASVS RTVKLDLVQG
201: GLEPVEEKKE RGTIQEVLVQ QMASSLTKDP KFTAALATAI SGRLIEHSRT
Arabidopsis Description
WRKY60Probable WRKY transcription factor 60 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.